Ss1.1-Pig3-SRG8012N12.3
               |  | CTCTGGTGAGTGGTGCTGAGTGGCTGGCAGGGGGCCCGGGGGTGGGAGTGGTCCGATGGG
AGCTGTGTGACTGCTGGCAGCCTTTACTTTCCCTGGCCTGGGAGGTCAGGGACACCCTCA
CCCCATATCAGCCTGAGCCACCCCTTGCTTCCCTTCCCCATGGCCTCGCAAGGGCCGCGA
GGGGTACAGGCATTTCGGCAAGGCCCCATGGACCCCGCACAGCCACACCAAGTGAGTATA
CCTATTCCTGCCTCTCTCCTGGACCCCACGCTGCAGCTCTAGGCTTTGCCATGCTTCCAG
CTGCTTTTCCTCCCACTATTCCATCCTCATGCCGTTCTGGAGTCCCCCACCCCATTTTAC
CCGCTTTTTCTTCAAGACTTGGCTTGAAACTGTAAACCTATCCTGCTCCTGGGCTTTGAG
CTCCCTCCGCATGCAGCATCACAGATGCACAGGTTCTTTTAGGTTCAGGTGGGGCCTGTG
TTTTGTCCAGCTATGGGGCACCCAGGTTGATGCATAGTGAGGGAGCTTCGGCAGCCCCTC
CTGGCATCTTGGCTTTCGGCACTGCCGGTTGGTCTTTCTTGGGTTGAATGGGGCCTCCTG
GTGTCCCTGTGCTGCTCTGATAGAACAAGCATCACTGTTATAAGCCACCAGCTCGCAGAC
GCGAGGTGTACAGGCATTTCGGCAAGGCCCCAGGGACCCCGCACAGCCACACCAAACCCT
ATGTTCGCTCCAAGGGCCGGAAGTTCGAGCGCGCCAGAGGCCGACGTGCCAGCCGCGGCT
ACAAAAACTAACCCCAGAGCCTGCCTTGTTATTAAAAAGATTTTGAATAAAAAAAAAAAA
AAAAAAAAAAAACTGTGCGGCCGCTCTAGAGGATCCAAGCTTACGTACGCGTGCATGCGA
CGTCATAGCTCTTCTATAGTGTCA | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | CTCTGGTGAGTGGTGCTGAGTGGCTGGCAGGGGGCCCGGGGGTGGGAGTGGTCCGATGGG
AGCTGTGTGACTGCTGGCAGCCTTTACTTTCCCTGGCCTGGGAGGTCAGGGACACCCTCA
CCCCATATCAGCCTGAGCCACCCCTTGCTTCCCTTCCCCATGGCCTCGCAAGGGCCGCGA
GGGGTACAGGCATTTCGGCAAGGCCCCATGGACCCCGCACAGCCACACCAAGTGAGTATA
CCTATTCCTGCCTCTCTCCTGGACCCCACGCTGCAGCTCTAGGCTTTGCCATGCTTCCAG
CTGCTTTTCCTCCCACTATTCCATCCTCATGCCGTTCTGGAGTCCCCCACCCCATTTTAC
CCGCTTTTTCTTCAAGACTTGGCTTGAAACTGTAAACCTATCCTGCTCCTGGGCTTTGAG
CTCCCTCCGCATGCAGCATCACAGATGCACAGGTTCTTTTAGGTTCAGGTGGGGCCTGTG
TTTTGTCCAGCTATGGGGCACCCAGGTTGATGCATAGTGAGGGAGCTTCGGCAGCCCCTC
CTGGCATCTTGGCTTTCGGCACTGCCGGTTGGTCTTTCTTGGGTTGAATGGGGCCTCCTG
GTGTCCCTGTGCTGCTCTGATAGAACAAGCATCACTGTTATAAGCCACCAGCTCGCAGAC
GCGAGGTGTACAGGCATTTCGGCAAGGCCCCAGGGACCCCGCACAGCCACACCAAACCCT
ATGTTCGCTCCAAGGGCCGGAAGTTCGAGCGCGCCAGAGGCCGACGTGCCAGCCGCGGCT
ACAAAAACTAACCCCAGAGCCTGCCTTGTTATTAAAAAGATTTTGAATAAAAAAAAAAAA
AAAAAAAAAAAACTGTGCGGCCGCTCTAGAGGATCCAAGCTTACGTACGCGTGCATGCGA
CGTCATAGCTCTTCTATAGTGTCA | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map