Non-Coding RNA Search

Ss1.1-Pig3-SRG8012P08.3

Sequence:


               
               CAACACCATATCCTTTTAACCCACTGTGCCAGGCCAGGGACTGAACCCACAGCTCTGCAG
AGACCCAAGCCACTGCAGTCATATTCTGTGCTACAGCAGGAACTCCAAGAGTCATAGCTT
CTGTTTGCAGATGCTCTCCCTTTCTCATTTTCTCCTTTTTTTCCCTCCTTCCATCCTAAC
ACAAACAAAATGAGACTACTAACAGAATTTTTTTTTTCTCTTTCACATCAGATGCAACTC
CAGTAGTACCTTCACGGGCCGCAACTCCAAGATCTGCAAGAAATAAATCTCATGAAGGAA
TTACAAATTCTGTAATGCCTGAATGTAAGAATCCTTTCAAGTTAATGATTGGATCATCAA
ATGCCATGGGAAGGCTATATGTACAAGAACTGCCTGGAAGCCAGCAACAAGAACTCCACC
CTGTCTACCCCCGGCAAAGATTGGGCAGCAGCGAACACGGACAGAAATCTCCATTCCGTG
GCAGCCATGGAGGCCTGCCCAGCCCAGCGTCATCAGGTTCCCAGATATATGGAGATGGCT
CAATCTCTCCAAGGACTGACCCACTTGGAAGCCCTGATGTTTTCACAAGAAGTAATCCTG
GTTTTCATGGAGCTCCCAATTCCAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCAC
CTTCAGTAATGCTACATGGTTCTCCTATACAGTCATCTTGTGCAATGGCTGGAAGGACTA
ATATACCTCTTTCCCCAACCTTGACTACAAAGAGTCCAGTAATGAAAAAACCAATGTGTA
ATTTTTCAACTAATATGGAAATACCACGAGCAATGTTTCACCACAAACCACCCCAAGGCC
CACCTCCCCCTCCTCCACCTTCTTGTGCTCTTCAGAAAAAGCCATTAACATCCGAAAAAG
ATCCACTTGGCATTCTTGACCCTATTCCTAGTAAACCGGTGAATCAGAACCCTGTTATCA
TTAATCCAACTAGTTTCCATTCAAATGTCCACTCTCAGGTACCTGTGATGAATGTAAGCA
TGCCTCCTGCTGTTGTTCCTTTGCCAAGTAATCTCCCTTTGCCAACTGTAAAACCTGGTC
ACATGAATCATGGGAGTCATGTACAGAGAGTTCAGCATTCAGCTTCAACCTCCCTGTCCC
CTTCTCCAGTGACATCCCCAGTGCACATGATGGGGACTGGAATTGGAAGGATTGAGGCAT
CGCCCCAAAGATCACGCTCATCTTCCACATCATCAGATCACGGAAATTTCATGATGCCAC
CTCTAGGACCCCAGGCCACGTGTAGTGGTATTAAGGTTCCACCCAGGTCACCAAGGTCAA
CGATAGGGTCCCCAAGGCCATCAATGCCATCAAGCCCTTCTACCAAGTCCGATGGACATC
ATCAGTACAAGGATATCCCTAACCCATTAATTGCTGGAATGAGTAATGTACTAAATACCC
CAAGCAGTGCAGCTTTTCCTACTGCATCTGCCGGAAGTGGTTCTGTAAAGAGTCAGCCTG
GTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCCTTTCCAG
CAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAACAAACTTGCTG
GTAACAACAGTAGCAGCAGTAGCAATTCTGGAGCTGTTGCTGGCAGTGGCACACTGAAGG
ACATAGCACTTTAAACACCATGTTCCCTCCTACTGCCAACATGCTTCTCCAACAGGTGAA
GGGCAANGTGGTCGAGCAGCACTAAGAGATAAGCTGATGTCTCAGCAAAAAGACTCATTG
CGAAANAGAAAACAGCACCTACCACAGTGTTGAGTTTGCTCAGACAGTCTCAATGGNTAG
TTCTGCGTTCTNAACCTGGACCGACTTGCTAAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACACCATATCCTTTTAACCCACTGTGCCAGGCCAGGGACTGAACCCACAGCTCTGCAG
AGACCCAAGCCACTGCAGTCATATTCTGTGCTACAGCAGGAACTCCAAGAGTCATAGCTT
CTGTTTGCAGATGCTCTCCCTTTCTCATTTTCTCCTTTTTTTCCCTCCTTCCATCCTAAC
ACAAACAAAATGAGACTACTAACAGAATTTTTTTTTTCTCTTTCACATCAGATGCAACTC
CAGTAGTACCTTCACGGGCCGCAACTCCAAGATCTGCAAGAAATAAATCTCATGAAGGAA
TTACAAATTCTGTAATGCCTGAATGTAAGAATCCTTTCAAGTTAATGATTGGATCATCAA
ATGCCATGGGAAGGCTATATGTACAAGAACTGCCTGGAAGCCAGCAACAAGAACTCCACC
CTGTCTACCCCCGGCAAAGATTGGGCAGCAGCGAACACGGACAGAAATCTCCATTCCGTG
GCAGCCATGGAGGCCTGCCCAGCCCAGCGTCATCAGGTTCCCAGATATATGGAGATGGCT
CAATCTCTCCAAGGACTGACCCACTTGGAAGCCCTGATGTTTTCACAAGAAGTAATCCTG
GTTTTCATGGAGCTCCCAATTCCAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCAC
CTTCAGTAATGCTACATGGTTCTCCTATACAGTCATCTTGTGCAATGGCTGGAAGGACTA
ATATACCTCTTTCCCCAACCTTGACTACAAAGAGTCCAGTAATGAAAAAACCAATGTGTA
ATTTTTCAACTAATATGGAAATACCACGAGCAATGTTTCACCACAAACCACCCCAAGGCC
CACCTCCCCCTCCTCCACCTTCTTGTGCTCTTCAGAAAAAGCCATTAACATCCGAAAAAG
ATCCACTTGGCATTCTTGACCCTATTCCTAGTAAACCGGTGAATCAGAACCCTGTTATCA
TTAATCCAACTAGTTTCCATTCAAATGTCCACTCTCAGGTACCTGTGATGAATGTAAGCA
TGCCTCCTGCTGTTGTTCCTTTGCCAAGTAATCTCCCTTTGCCAACTGTAAAACCTGGTC
ACATGAATCATGGGAGTCATGTACAGAGAGTTCAGCATTCAGCTTCAACCTCCCTGTCCC
CTTCTCCAGTGACATCCCCAGTGCACATGATGGGGACTGGAATTGGAAGGATTGAGGCAT
CGCCCCAAAGATCACGCTCATCTTCCACATCATCAGATCACGGAAATTTCATGATGCCAC
CTCTAGGACCCCAGGCCACGTGTAGTGGTATTAAGGTTCCACCCAGGTCACCAAGGTCAA
CGATAGGGTCCCCAAGGCCATCAATGCCATCAAGCCCTTCTACCAAGTCCGATGGACATC
ATCAGTACAAGGATATCCCTAACCCATTAATTGCTGGAATGAGTAATGTACTAAATACCC
CAAGCAGTGCAGCTTTTCCTACTGCATCTGCCGGAAGTGGTTCTGTAAAGAGTCAGCCTG
GTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCCTTTCCAG
CAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAACAAACTTGCTG
GTAACAACAGTAGCAGCAGTAGCAATTCTGGAGCTGTTGCTGGCAGTGGCACACTGAAGG
ACATAGCACTTTAAACACCATGTTCCCTCCTACTGCCAACATGCTTCTCCAACAGGTGAA
GGGCAANGTGGTCGAGCAGCACTAAGAGATAAGCTGATGTCTCAGCAAAAAGACTCATTG
CGAAANAGAAAACAGCACCTACCACAGTGTTGAGTTTGCTCAGACAGTCTCAATGGNTAG
TTCTGCGTTCTNAACCTGGACCGACTTGCTAAGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859660|ref|XP_581453.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859660|ref|XP_581453.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               549-708, - strand, RNAz p=0.989142
               

               
               1109-1228, - strand, RNAz p=0.585862
               

               
               1429-1786, - strand, RNAz p=0.943807

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               549-708, - strand, RNAz p=0.989142
               

               
               1109-1228, - strand, RNAz p=0.585862
               

               
               1429-1786, - strand, RNAz p=0.943807

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               119-1895, gnl|bosTau2|chr2 (31192865-31191082)
               

               
               119-1895, gnl|Hg17|chr2 (149059523-149061312)
               

               
               119-1895, gnl|Mm7|chr2 (49263375-49265158)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-1895, gnl|bosTau2|chr2 (31192865-31191082)
               

               
               119-1895, gnl|Hg17|chr2 (149059523-149061312)
               

               
               119-1895, gnl|Mm7|chr2 (49263375-49265158)

	549-708, - strand, RNAz p=0.989142
	1109-1228, - strand, RNAz p=0.585862
	1429-1786, - strand, RNAz p=0.943807

	119-1895, gnl\|bosTau2\|chr2 (31192865-31191082)
	119-1895, gnl\|Hg17\|chr2 (149059523-149061312)
	119-1895, gnl\|Mm7\|chr2 (49263375-49265158)