Non-Coding RNA Search

Ss1.1-Pig3-SRG8013A13.5

Sequence:


               
               TAAATATATGCTTCTTTCCTGGGAGGTAAGAGTCAGAGGAAGTTTCCGGTGTGCTGGTTT
TCACGTGGAAGAGGAAATGAAAATAATAACCCATTTATCTACTAGATGAAATGCGCTTTG
CTTTGGCTTTATTTATGGGGAAACCTGGACAATGGTCATTGAACTTTTAAAATGGAACTT
TCAGTGCCGCTGCCATGTGACCAGGCTGCAAACATGAAGGAGAAGGGTGAGCGGCATCAA
CATTCTTTGATTGGGGAGCACAGCAGAGGTAGATAAGGAAGCAGCCTAGGCGACCCACCT
CCCAGCCAGGGGAGGAGGACACAGCCTGGAATGTCTGCAATGTGTTTCTATTTTCGTCGC
ACCTACGTGTGGCCACCCATCTGGTCTGAATCAGTTAGTCTCATCCCAGGGCTCTGCTCC
TCTTCCAGCTGAAATAATACCCTCCTTTCCCAATGCTCTGCCTTAAGGAGGGTCACCGTT
CACGACGGCCCAGGCAAGACTCTTCACAAGGCTGCTGCATGTTTGTAAACACTGGTGAAC
CCAGGAGGAGGCAGTGGGGAGAAGCTGCTTTTTTCATGAGGATATTTTTATGGATAAACT
CTGCTCTCCTAGAAACAGTACTTGGGAAAACTGGATTCATCGTTAGAGAAATATTTGACC
CCAGAAATTGAAAGAATGAGCTATGCAATTGTGTTTCCTCCACCCTAATTTTTGGTTTAA
TGCAACTTTCTTTGCCTGAGTTTAAAACCATGAATTTTTGTGCTGTTACATCTCAGGCCA
AGAAAGCCAAGGTAGGAGGTGTCAGCTGTGACTTAGCTTGAGGTATTTTCTTAGGCTGTT
TCACTCTGCTCCATACTGGAAGTAATGTTGCACCTCTGGACCAACTCTACGCCTCTGCTT
CTAGAGCACTTTTCTGGCTTTCTTCAAATATACACTGTGTTCTTTAGCAACTGCACATCC
ATGCCTCCCCTGTCAAATTCCTACACACCCGATGGCCTCTCTCTTGATTTTCCAGCTACT
AAAATATGGGCCTCTATTAAAAGGGTCAAGGTATTCACCAGTGAAACCAGTCATAGCACA
CTTCCCACAAAGAGACCTCAAAACACTGATACTGGCATTGACCAATTAAATAGCCCGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATATATGCTTCTTTCCTGGGAGGTAAGAGTCAGAGGAAGTTTCCGGTGTGCTGGTTT
TCACGTGGAAGAGGAAATGAAAATAATAACCCATTTATCTACTAGATGAAATGCGCTTTG
CTTTGGCTTTATTTATGGGGAAACCTGGACAATGGTCATTGAACTTTTAAAATGGAACTT
TCAGTGCCGCTGCCATGTGACCAGGCTGCAAACATGAAGGAGAAGGGTGAGCGGCATCAA
CATTCTTTGATTGGGGAGCACAGCAGAGGTAGATAAGGAAGCAGCCTAGGCGACCCACCT
CCCAGCCAGGGGAGGAGGACACAGCCTGGAATGTCTGCAATGTGTTTCTATTTTCGTCGC
ACCTACGTGTGGCCACCCATCTGGTCTGAATCAGTTAGTCTCATCCCAGGGCTCTGCTCC
TCTTCCAGCTGAAATAATACCCTCCTTTCCCAATGCTCTGCCTTAAGGAGGGTCACCGTT
CACGACGGCCCAGGCAAGACTCTTCACAAGGCTGCTGCATGTTTGTAAACACTGGTGAAC
CCAGGAGGAGGCAGTGGGGAGAAGCTGCTTTTTTCATGAGGATATTTTTATGGATAAACT
CTGCTCTCCTAGAAACAGTACTTGGGAAAACTGGATTCATCGTTAGAGAAATATTTGACC
CCAGAAATTGAAAGAATGAGCTATGCAATTGTGTTTCCTCCACCCTAATTTTTGGTTTAA
TGCAACTTTCTTTGCCTGAGTTTAAAACCATGAATTTTTGTGCTGTTACATCTCAGGCCA
AGAAAGCCAAGGTAGGAGGTGTCAGCTGTGACTTAGCTTGAGGTATTTTCTTAGGCTGTT
TCACTCTGCTCCATACTGGAAGTAATGTTGCACCTCTGGACCAACTCTACGCCTCTGCTT
CTAGAGCACTTTTCTGGCTTTCTTCAAATATACACTGTGTTCTTTAGCAACTGCACATCC
ATGCCTCCCCTGTCAAATTCCTACACACCCGATGGCCTCTCTCTTGATTTTCCAGCTACT
AAAATATGGGCCTCTATTAAAAGGGTCAAGGTATTCACCAGTGAAACCAGTCATAGCACA
CTTCCCACAAAGAGACCTCAAAACACTGATACTGGCATTGACCAATTAAATAGCCCGCCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               309-428, + strand, RNAz p=0.894053
               

               
               787-894, + strand, RNAz p=0.998752

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-428, + strand, RNAz p=0.894053
               

               
               787-894, + strand, RNAz p=0.998752

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-695, gnl|bosTau2|chr2 (35588396-35587712)
               

               
               1-695, gnl|Hg17|chr2 (145065860-145065207)
               

               
               1-695, gnl|Mm7|chr2 (45075017-45074389)
               


               
               707-1074, gnl|bosTau2|chr2 (35587486-35587108)
               

               
               707-1074, gnl|Hg17|chr2 (145065178-145064703)
               

               
               707-1074, gnl|Mm7|chr2 (45074023-45073675)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr2 (35588396-35587712)
               

               
               1-695, gnl|Hg17|chr2 (145065860-145065207)
               

               
               1-695, gnl|Mm7|chr2 (45075017-45074389)
               


               
               707-1074, gnl|bosTau2|chr2 (35587486-35587108)
               

               
               707-1074, gnl|Hg17|chr2 (145065178-145064703)
               

               
               707-1074, gnl|Mm7|chr2 (45074023-45073675)

	309-428, + strand, RNAz p=0.894053
	787-894, + strand, RNAz p=0.998752

	1-695, gnl\|bosTau2\|chr2 (35588396-35587712)
	1-695, gnl\|Hg17\|chr2 (145065860-145065207)
	1-695, gnl\|Mm7\|chr2 (45075017-45074389)

	707-1074, gnl\|bosTau2\|chr2 (35587486-35587108)
	707-1074, gnl\|Hg17\|chr2 (145065178-145064703)
	707-1074, gnl\|Mm7\|chr2 (45074023-45073675)