Non-Coding RNA Search

Ss1.1-Pig3-SRG8013A15.3

Sequence:


               
               TGGGTGAGCTCATCAACCTGTGCTCCAATGATGGGCAGAGGATGTTCGAGGCAGCCGCCG
TTGGCAGCTTGTTGGCTGGAGGACCCGTTATTGCCATCCTGGGCATGGTTTATAATGTAA
TTATTCTGGGACCAACAGGCTTCCTGGGATCAGCTGTTTTTATCCTCTTTTATCCTGCAA
TGATGTTTGTGTCACGGATCACTGCATATTTCAGGAGAAAATGTGTGACCATCACAGATG
ACCGTGTCCAAAAGATGAATGAAGTCCTTACCTACATTAAATTTATTAAAATGTATGCCT
GGGTCAAAGCATTCTCTCAGAGTGTGCAAAAAATCCGAGAGGAGGAACGTCGGATGTTGG
AAAAGGCTGGGTACTTTCAGAGCATCACGGTTGGTGTGGCTCCCATTGTCATGGTGATTG
CCAGCGTGGTGACCTTCTCTGTTCACATGACCCTTGGCTTTGATCTGACAGCAGCACAGG
CTTTCACAGTGGTGACTGTCTTCAATTCCATGACTTTTGCTTTGAAAGTTACACCGTTCT
CAGTAAAGTCCCTCTCAGAAGCATCCGTCGCTGTCGACAGATTTAAGAGTTTGTTTCTAA
TTCCTGCCTCTGTGTTAAGAGCCGTCTGTGGCCAAACCTACAGCTGCCTTTATTCCCACG
GGCCACATGGGCTGGCCGCGCTTGGCTTTTTTCACCTTTAGCTTTTTGGCAAGTTGGTAA
AAGGGGGCAGTGGAGGAGACTCAACTAAAGGACCTTTTCAAAGAAACAAGAATTTTTACC
TTTCACAGACTGCCTAGTTCTGGGCTCCCAAAATTACAGTTGCCCTTCAGAGCTAGTCCT
TTCTCCTTGGACCTAACATGGTTATGTGTTAAAACTCACTGGGCCTTCCAGTTAAACCTA
GGCTCCCTTAGAATAGAGTTGAGCTGTCAGGTGACTATTAGCTTTTTCTCACCTTCATCT
ATATCTACCTCTACCAAAATGCTGTCAGTCACAGGCTCTTTTTGATTTTTTTCCCTGCCC
TGTGGTTGCCACTCATGATACAGGGAATGCAGTGACATAGGAATAGTCTTAAAACTAGTT
CATTTTGAGAAGTGCAGTTAAGTACGTATCAGGGTTTTTTTCCCTGCAGATGGTTAGTTG
ATTATGCCTTGACTGTTCTTTGTGCCTTCAGAATAATACAAAGAGGTGATACAAGAGATA
TAATTTGGGAGGGTAGAGAGAGGTAGGTATTTGAAAGTGGCTAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGAGCTCATCAACCTGTGCTCCAATGATGGGCAGAGGATGTTCGAGGCAGCCGCCG
TTGGCAGCTTGTTGGCTGGAGGACCCGTTATTGCCATCCTGGGCATGGTTTATAATGTAA
TTATTCTGGGACCAACAGGCTTCCTGGGATCAGCTGTTTTTATCCTCTTTTATCCTGCAA
TGATGTTTGTGTCACGGATCACTGCATATTTCAGGAGAAAATGTGTGACCATCACAGATG
ACCGTGTCCAAAAGATGAATGAAGTCCTTACCTACATTAAATTTATTAAAATGTATGCCT
GGGTCAAAGCATTCTCTCAGAGTGTGCAAAAAATCCGAGAGGAGGAACGTCGGATGTTGG
AAAAGGCTGGGTACTTTCAGAGCATCACGGTTGGTGTGGCTCCCATTGTCATGGTGATTG
CCAGCGTGGTGACCTTCTCTGTTCACATGACCCTTGGCTTTGATCTGACAGCAGCACAGG
CTTTCACAGTGGTGACTGTCTTCAATTCCATGACTTTTGCTTTGAAAGTTACACCGTTCT
CAGTAAAGTCCCTCTCAGAAGCATCCGTCGCTGTCGACAGATTTAAGAGTTTGTTTCTAA
TTCCTGCCTCTGTGTTAAGAGCCGTCTGTGGCCAAACCTACAGCTGCCTTTATTCCCACG
GGCCACATGGGCTGGCCGCGCTTGGCTTTTTTCACCTTTAGCTTTTTGGCAAGTTGGTAA
AAGGGGGCAGTGGAGGAGACTCAACTAAAGGACCTTTTCAAAGAAACAAGAATTTTTACC
TTTCACAGACTGCCTAGTTCTGGGCTCCCAAAATTACAGTTGCCCTTCAGAGCTAGTCCT
TTCTCCTTGGACCTAACATGGTTATGTGTTAAAACTCACTGGGCCTTCCAGTTAAACCTA
GGCTCCCTTAGAATAGAGTTGAGCTGTCAGGTGACTATTAGCTTTTTCTCACCTTCATCT
ATATCTACCTCTACCAAAATGCTGTCAGTCACAGGCTCTTTTTGATTTTTTTCCCTGCCC
TGTGGTTGCCACTCATGATACAGGGAATGCAGTGACATAGGAATAGTCTTAAAACTAGTT
CATTTTGAGAAGTGCAGTTAAGTACGTATCAGGGTTTTTTTCCCTGCAGATGGTTAGTTG
ATTATGCCTTGACTGTTCTTTGTGCCTTCAGAATAATACAAAGAGGTGATACAAGAGATA
TAATTTGGGAGGGTAGAGAGAGGTAGGTATTTGAAAGTGGCTAATATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               7-185, - strand, RNAz p=0.931034
               

               
               47-160, + strand, RNAz p=0.984386

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-185, - strand, RNAz p=0.931034
               

               
               47-160, + strand, RNAz p=0.984386

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               7-185, gnl|bosTau2|chr1 (51618921-51618743)
               

               
               7-185, gnl|canFam2|chr34 (19917212-19917416)
               

               
               7-185, gnl|danRer3|chr18 (34789809-34789611)
               

               
               7-185, gnl|dasNov1|scaffold_3955 (45078-44871)
               

               
               7-185, gnl|echTel1|scaffold_311174 (36053-35846)
               

               
               7-185, gnl|fr1|chrUn (70779829-70780028)
               

               
               7-185, gnl|galGal2|chr9 (15095369-15095571)
               

               
               7-185, gnl|hg17|chr3 (185182933-185183137)
               

               
               7-185, gnl|Hg17|chr3 (185183116-185182938)
               

               
               7-185, gnl|loxAfr1|scaffold_8326 (560-764)
               

               
               7-185, gnl|mm7|chr16 (19949488-19949692)
               

               
               7-185, gnl|Mm7|chr16 (19949671-19949493)
               

               
               7-185, gnl|monDom2|scaffold_167 (1290606-1290808)
               

               
               7-185, gnl|oryCun1|scaffold_193319 (7225-7021)
               

               
               7-185, gnl|panTro1|chr2 (189129298-189129502)
               

               
               7-185, gnl|rheMac2|chr2 (102695617-102695413)
               

               
               7-185, gnl|rn3|chr11 (82807591-82807387)
               

               
               7-185, gnl|tetNig1|chr1 (4890625-4890820)
               

               
               7-185, gnl|xenTro1|scaffold_1143 (129318-129116)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-185, gnl|bosTau2|chr1 (51618921-51618743)
               

               
               7-185, gnl|canFam2|chr34 (19917212-19917416)
               

               
               7-185, gnl|danRer3|chr18 (34789809-34789611)
               

               
               7-185, gnl|dasNov1|scaffold_3955 (45078-44871)
               

               
               7-185, gnl|echTel1|scaffold_311174 (36053-35846)
               

               
               7-185, gnl|fr1|chrUn (70779829-70780028)
               

               
               7-185, gnl|galGal2|chr9 (15095369-15095571)
               

               
               7-185, gnl|hg17|chr3 (185182933-185183137)
               

               
               7-185, gnl|Hg17|chr3 (185183116-185182938)
               

               
               7-185, gnl|loxAfr1|scaffold_8326 (560-764)
               

               
               7-185, gnl|mm7|chr16 (19949488-19949692)
               

               
               7-185, gnl|Mm7|chr16 (19949671-19949493)
               

               
               7-185, gnl|monDom2|scaffold_167 (1290606-1290808)
               

               
               7-185, gnl|oryCun1|scaffold_193319 (7225-7021)
               

               
               7-185, gnl|panTro1|chr2 (189129298-189129502)
               

               
               7-185, gnl|rheMac2|chr2 (102695617-102695413)
               

               
               7-185, gnl|rn3|chr11 (82807591-82807387)
               

               
               7-185, gnl|tetNig1|chr1 (4890625-4890820)
               

               
               7-185, gnl|xenTro1|scaffold_1143 (129318-129116)

	7-185, - strand, RNAz p=0.931034
	47-160, + strand, RNAz p=0.984386

	7-185, gnl\|bosTau2\|chr1 (51618921-51618743)
	7-185, gnl\|canFam2\|chr34 (19917212-19917416)
	7-185, gnl\|danRer3\|chr18 (34789809-34789611)
	7-185, gnl\|dasNov1\|scaffold_3955 (45078-44871)
	7-185, gnl\|echTel1\|scaffold_311174 (36053-35846)
	7-185, gnl\|fr1\|chrUn (70779829-70780028)
	7-185, gnl\|galGal2\|chr9 (15095369-15095571)
	7-185, gnl\|hg17\|chr3 (185182933-185183137)
	7-185, gnl\|Hg17\|chr3 (185183116-185182938)
	7-185, gnl\|loxAfr1\|scaffold_8326 (560-764)
	7-185, gnl\|mm7\|chr16 (19949488-19949692)
	7-185, gnl\|Mm7\|chr16 (19949671-19949493)
	7-185, gnl\|monDom2\|scaffold_167 (1290606-1290808)
	7-185, gnl\|oryCun1\|scaffold_193319 (7225-7021)
	7-185, gnl\|panTro1\|chr2 (189129298-189129502)
	7-185, gnl\|rheMac2\|chr2 (102695617-102695413)
	7-185, gnl\|rn3\|chr11 (82807591-82807387)
	7-185, gnl\|tetNig1\|chr1 (4890625-4890820)
	7-185, gnl\|xenTro1\|scaffold_1143 (129318-129116)