Ss1.1-Pig3-SRG8013E22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTAACATCTGCCAGTTTTTCTTTTTTAGGCTTCTGGTCACCTTTAATGTTCCTTTTGGA AAATCAAAATACTGACCTGCCTCCCGATTCCCTCCGCTATTCAGGATGACGGGCTCTCGG AGCGTCAGTCTGTCTTTGCTGTACTGCGCCAGGCAGAACTTGTTCCGGCCACCGTGAACG ACTACCGAGAGAAGCTGCTTCATCTGCGGAAGCTGAGACATGATGTGGTGCAGACTGCAG TCCCCGACGGGCCCTTACAGGAGGTGCCACTTCGTTACTTACTAGGCATGTTATATGTTA ACTTCAGTGCTCTCTGGGATCCTGTTACCGAACTCATAAGTTCTCATGCCCACGAAATGG AAAATAAGCAATTTTGGAAAGTCTACTATGAACATCTAGAAAGAGCAGCAACACATGCTG AGAAGGAACTGCAGAATGACACAGGCCAAGAGGAGAAGGCCATTGGAGATGCGCGCTGGG AGCAGACTCAGGAAGGGCACGTCGGAGCCCTTTATCACGAGCAGTTCGCATTGAAAACCA ACCTTCAGGAAAGACTGGACCATACCAATTTTCGGTTTTTACTCTGGCGAGCTCTGGCAA AATTCCCCGAAAGGGTAGAGCCACGGTCCAGGGAGCTTTCCCCGCTTTTTTTGAGATTTA TCAACAATGAGTATTACCCAGCAGATCTGCAAGTTGCCCCAACCCAGGATCTGCGAAGAA AAGACAAAGGGCTGGCAGCGGAGGAAATGGAAGAGGAACCTGCAGCTGGAGATGATGAAG AGTTGGAGGAAGAGCTGGAGCCCCAAGATGAACCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTAACATCTGCCAGTTTTTCTTTTTTAGGCTTCTGGTCACCTTTAATGTTCCTTTTGGA AAATCAAAATACTGACCTGCCTCCCGATTCCCTCCGCTATTCAGGATGACGGGCTCTCGG AGCGTCAGTCTGTCTTTGCTGTACTGCGCCAGGCAGAACTTGTTCCGGCCACCGTGAACG ACTACCGAGAGAAGCTGCTTCATCTGCGGAAGCTGAGACATGATGTGGTGCAGACTGCAG TCCCCGACGGGCCCTTACAGGAGGTGCCACTTCGTTACTTACTAGGCATGTTATATGTTA ACTTCAGTGCTCTCTGGGATCCTGTTACCGAACTCATAAGTTCTCATGCCCACGAAATGG AAAATAAGCAATTTTGGAAAGTCTACTATGAACATCTAGAAAGAGCAGCAACACATGCTG AGAAGGAACTGCAGAATGACACAGGCCAAGAGGAGAAGGCCATTGGAGATGCGCGCTGGG AGCAGACTCAGGAAGGGCACGTCGGAGCCCTTTATCACGAGCAGTTCGCATTGAAAACCA ACCTTCAGGAAAGACTGGACCATACCAATTTTCGGTTTTTACTCTGGCGAGCTCTGGCAA AATTCCCCGAAAGGGTAGAGCCACGGTCCAGGGAGCTTTCCCCGCTTTTTTTGAGATTTA TCAACAATGAGTATTACCCAGCAGATCTGCAAGTTGCCCCAACCCAGGATCTGCGAAGAA AAGACAAAGGGCTGGCAGCGGAGGAAATGGAAGAGGAACCTGCAGCTGGAGATGATGAAG AGTTGGAGGAAGAGCTGGAGCCCCAAGATGAACCCT |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 546-664, - strand, RNAz p=0.705603 | |
| 547-664, - strand, RNAz p=0.553178 | |
| 665-780, - strand, RNAz p=0.904549 | |
| 691-783, - strand, RNAz p=0.720419 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 546-664, - strand, RNAz p=0.705603 | |
| 547-664, - strand, RNAz p=0.553178 | |
| 665-780, - strand, RNAz p=0.904549 | |
| 691-783, - strand, RNAz p=0.720419 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 3-281, gnl|bosTau2|chr5 (41729161-41728880) | |
| 3-281, gnl|Hg17|chr12 (100204323-100204622) | |
| 420-664, gnl|bosTau2|chr5 (41726152-41725908) | |
| 420-664, gnl|canFam2|chr15 (43331128-43331409) | |
| 420-664, gnl|danRer3|chrUn (6708487-6708189) | |
| 420-664, gnl|dasNov1|scaffold_30551 (40815-41102) | |
| 420-664, gnl|echTel1|scaffold_320773 (94907-94619) | |
| 420-664, gnl|fr1|chrUn (73328058-73327784) | |
| 420-664, gnl|galGal2|chr1 (44422718-44422979) | |
| 420-664, gnl|hg17|chr12 (100208269-100208553) | |
| 420-664, gnl|Hg17|chr12 (100208281-100208522) | |
| 420-664, gnl|loxAfr1|scaffold_1531 (36013-36301) | |
| 420-664, gnl|mm7|chr10 (88357306-88357031) | |
| 420-664, gnl|Mm7|chr10 (88357294-88357053) | |
| 420-664, gnl|monDom2|scaffold_34 (12021159-12020877) | |
| 420-664, gnl|oryCun1|scaffold_178110 (65133-65402) | |
| 420-664, gnl|panTro1|chr10 (102659729-102660013) | |
| 420-664, gnl|rheMac2|chr11 (102510883-102511164) | |
| 420-664, gnl|rn3|chr7 (25496309-25496033) | |
| 420-664, gnl|tetNig1|chrUn_random (55216139-55215868) | |
| 420-664, gnl|xenTro1|scaffold_230 (496643-496346) | |
| 665-815, gnl|bosTau2|chr5 (41722157-41722007) | |
| 665-815, gnl|canFam2|chr15 (43335190-43335395) | |
| 665-815, gnl|dasNov1|scaffold_30551 (45955-46157) | |
| 665-815, gnl|fr1|chrUn (73327705-73327518) | |
| 665-815, gnl|galGal2|chr1 (44423361-44423575) | |
| 665-815, gnl|hg17|chr12 (100213720-100213925) | |
| 665-815, gnl|Hg17|chr12 (100213724-100213874) | |
| 665-815, gnl|loxAfr1|scaffold_1531 (41129-41334) | |
| 665-815, gnl|mm7|chr10 (88354343-88354135) | |
| 665-815, gnl|Mm7|chr10 (88354337-88354184) | |
| 665-815, gnl|monDom2|scaffold_34 (12017986-12017760) | |
| 665-815, gnl|oryCun1|scaffold_178110 (71436-71645) | |
| 665-815, gnl|panTro1|chr10 (102665177-102665382) | |
| 665-815, gnl|rheMac2|chr11 (102515985-102516190) | |
| 665-815, gnl|rn3|chr7 (25492479-25492274) | |
| 665-815, gnl|tetNig1|chrUn_random (55215783-55215602) | |
| 665-815, gnl|xenTro1|scaffold_230 (492876-492662) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-281, gnl|bosTau2|chr5 (41729161-41728880) | |
| 3-281, gnl|Hg17|chr12 (100204323-100204622) | |
| 420-664, gnl|bosTau2|chr5 (41726152-41725908) | |
| 420-664, gnl|canFam2|chr15 (43331128-43331409) | |
| 420-664, gnl|danRer3|chrUn (6708487-6708189) | |
| 420-664, gnl|dasNov1|scaffold_30551 (40815-41102) | |
| 420-664, gnl|echTel1|scaffold_320773 (94907-94619) | |
| 420-664, gnl|fr1|chrUn (73328058-73327784) | |
| 420-664, gnl|galGal2|chr1 (44422718-44422979) | |
| 420-664, gnl|hg17|chr12 (100208269-100208553) | |
| 420-664, gnl|Hg17|chr12 (100208281-100208522) | |
| 420-664, gnl|loxAfr1|scaffold_1531 (36013-36301) | |
| 420-664, gnl|mm7|chr10 (88357306-88357031) | |
| 420-664, gnl|Mm7|chr10 (88357294-88357053) | |
| 420-664, gnl|monDom2|scaffold_34 (12021159-12020877) | |
| 420-664, gnl|oryCun1|scaffold_178110 (65133-65402) | |
| 420-664, gnl|panTro1|chr10 (102659729-102660013) | |
| 420-664, gnl|rheMac2|chr11 (102510883-102511164) | |
| 420-664, gnl|rn3|chr7 (25496309-25496033) | |
| 420-664, gnl|tetNig1|chrUn_random (55216139-55215868) | |
| 420-664, gnl|xenTro1|scaffold_230 (496643-496346) | |
| 665-815, gnl|bosTau2|chr5 (41722157-41722007) | |
| 665-815, gnl|canFam2|chr15 (43335190-43335395) | |
| 665-815, gnl|dasNov1|scaffold_30551 (45955-46157) | |
| 665-815, gnl|fr1|chrUn (73327705-73327518) | |
| 665-815, gnl|galGal2|chr1 (44423361-44423575) | |
| 665-815, gnl|hg17|chr12 (100213720-100213925) | |
| 665-815, gnl|Hg17|chr12 (100213724-100213874) | |
| 665-815, gnl|loxAfr1|scaffold_1531 (41129-41334) | |
| 665-815, gnl|mm7|chr10 (88354343-88354135) | |
| 665-815, gnl|Mm7|chr10 (88354337-88354184) | |
| 665-815, gnl|monDom2|scaffold_34 (12017986-12017760) | |
| 665-815, gnl|oryCun1|scaffold_178110 (71436-71645) | |
| 665-815, gnl|panTro1|chr10 (102665177-102665382) | |
| 665-815, gnl|rheMac2|chr11 (102515985-102516190) | |
| 665-815, gnl|rn3|chr7 (25492479-25492274) | |
| 665-815, gnl|tetNig1|chrUn_random (55215783-55215602) | |
| 665-815, gnl|xenTro1|scaffold_230 (492876-492662) |