Ss1.1-Pig3-SRG8013G06.5
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CTTCTCAGTATATTATACATGTGAATTTTTTTTTAAATTATCTGACCACTTTTTAGCCAT
CTAGAACTCCAGGAATGTGGTGATCAAGTAGAGTACTGAACACAGTACTGCTTATTGACA
GTATAAGCCAGTCTGCTTACTGACATAGAACAAGGCCTGGAGCCATACTGGGCTGAGAAA
AGGATAGGCTGGTCCCATCCTTTGGACCTAGATCCATGCATACCCCATGGCTGAGCAAAC
TGAACAAAGCTCCCCAAGGTGGGGCGAGCTTGAGGAATATGAACGATCTGGTTAACCAAA
GCATGTTCCCTTGCCAAGTGGTGTATATAATCCTGGGATAGAACCAAAGGGTTCCGGACA
AGGGAAGGGACCCATCATGTGACCAGAAGGCATGAAGTTCTATGATGTGCCCAGCTTCAG
ACACCTACCCAGCCCTTCAGTCACGGAGCTATATCTGTTTCTGAAGAAAGTGGTAAAGGT
CAGTTGATGATGCAAGACACAACCACTGGGAGAATAATATAGAGTTCTAGCTTGATGGTT
TTTTCCCCCCCTCACAGCATTTTGAAGATAGTGTCCTGTCATTTTCAGACTTCTATAATT
GCCAATGGGAAATATGTTGTCAGTCTGCTTGTTCTTCCATTGTAAGTAAATTGTATTTTC
------------------------------------------------------------
------------GGATTTATTTTTATTTATTTTGCTCAGGACTCAAATTTCTTCAATCTG
AAGATATGCATCTTTCTTCAAGGATGTGCAAAAAAAGATATTGTACAACCATCATAATGG
CAAAAATTAAAACTTATCAAGTGTTGGCAAGGATATGGGAAAAATTCTCATATGCTACCA
ATCCCACATTTATAAATGATTACAACATTTCTGGGGTGCCATCTGGGGGTACTAGCAAAA
CAGGATAACTTAAGATCAAGCAATTATAATTTTAGGCACCAATCTTGAGAAAACTTGCAT
TCATAGAAAAAGGAGATACATGCACATCTGTTCAGTGAAGCATTGTTTGCCATTGGGAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
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CTTCTCAGTATATTATACATGTGAATTTTTTTTTAAATTATCTGACCACTTTTTAGCCAT
CTAGAACTCCAGGAATGTGGTGATCAAGTAGAGTACTGAACACAGTACTGCTTATTGACA
GTATAAGCCAGTCTGCTTACTGACATAGAACAAGGCCTGGAGCCATACTGGGCTGAGAAA
AGGATAGGCTGGTCCCATCCTTTGGACCTAGATCCATGCATACCCCATGGCTGAGCAAAC
TGAACAAAGCTCCCCAAGGTGGGGCGAGCTTGAGGAATATGAACGATCTGGTTAACCAAA
GCATGTTCCCTTGCCAAGTGGTGTATATAATCCTGGGATAGAACCAAAGGGTTCCGGACA
AGGGAAGGGACCCATCATGTGACCAGAAGGCATGAAGTTCTATGATGTGCCCAGCTTCAG
ACACCTACCCAGCCCTTCAGTCACGGAGCTATATCTGTTTCTGAAGAAAGTGGTAAAGGT
CAGTTGATGATGCAAGACACAACCACTGGGAGAATAATATAGAGTTCTAGCTTGATGGTT
TTTTCCCCCCCTCACAGCATTTTGAAGATAGTGTCCTGTCATTTTCAGACTTCTATAATT
GCCAATGGGAAATATGTTGTCAGTCTGCTTGTTCTTCCATTGTAAGTAAATTGTATTTTC
------------------------------------------------------------
------------GGATTTATTTTTATTTATTTTGCTCAGGACTCAAATTTCTTCAATCTG
AAGATATGCATCTTTCTTCAAGGATGTGCAAAAAAAGATATTGTACAACCATCATAATGG
CAAAAATTAAAACTTATCAAGTGTTGGCAAGGATATGGGAAAAATTCTCATATGCTACCA
ATCCCACATTTATAAATGATTACAACATTTCTGGGGTGCCATCTGGGGGTACTAGCAAAA
CAGGATAACTTAAGATCAAGCAATTATAATTTTAGGCACCAATCTTGAGAAAACTTGCAT
TCATAGAAAAAGGAGATACATGCACATCTGTTCAGTGAAGCATTGTTTGCCATTGGGAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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107-644, gnl|bosTau2|chr22 (10150964-10151507) |
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661-1005, gnl|bosTau2|chr22 (10151570-10151927) |
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661-1005, gnl|canFam2|chr23 (12183176-12183425) |
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661-1005, gnl|dasNov1|scaffold_49734 (45751-45998) |
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661-1005, gnl|hg17|chr3 (39540895-39541146) |
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661-1005, gnl|Hg17|chr3 (39540912-39541267) |
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661-1005, gnl|loxAfr1|scaffold_28688 (6727-6478) |
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661-1005, gnl|mm7|chr9 (119875377-119875620) |
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661-1005, gnl|Mm7|chr9 (119875394-119875742) |
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661-1005, gnl|panTro1|chr2 (40670482-40670733) |
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661-1005, gnl|rheMac2|chr2 (96954997-96954737) |
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661-1005, gnl|rn3|chr8 (125166120-125166366) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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107-644, gnl|bosTau2|chr22 (10150964-10151507) |
| |
|
661-1005, gnl|bosTau2|chr22 (10151570-10151927) |
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661-1005, gnl|canFam2|chr23 (12183176-12183425) |
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661-1005, gnl|dasNov1|scaffold_49734 (45751-45998) |
|
661-1005, gnl|hg17|chr3 (39540895-39541146) |
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661-1005, gnl|Hg17|chr3 (39540912-39541267) |
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661-1005, gnl|loxAfr1|scaffold_28688 (6727-6478) |
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661-1005, gnl|mm7|chr9 (119875377-119875620) |
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661-1005, gnl|Mm7|chr9 (119875394-119875742) |
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661-1005, gnl|panTro1|chr2 (40670482-40670733) |
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661-1005, gnl|rheMac2|chr2 (96954997-96954737) |
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661-1005, gnl|rn3|chr8 (125166120-125166366) |