Non-Coding RNA Search

Ss1.1-Pig3-SRG8013H19.5

Sequence:


               
               GGAAGGGGATGCAGAGACCAGGGAGGAGCCGTCTTGAAACAACAGTAGTGCAGCCTTGGG
GCAGGGTCCTAGTTTAACAATCTCTTTGAGTTCTTCTGCAGAACTAAAACCCCCAACAAA
TAGAAGATGTTGAAGAAGCATCAGCTTTGAAAAACAATGAAAGCCATGACGGGAGCTCCA
AGAAAAGACAAGTTTATTGAGGCAAGAGACAGTGTTAACACAGTAGGCCGAATTCCTGAT
AATCAGGGAGAGCCAACCTTGGGTACATGGGTGTGCCTGTTTTTATAGCCCAGAGACCAA
GGAGTTCGAGGCGAGGTCTTGCCATATACCTGTTGACCTGCTGATTGGTCGGGGAAGAAT
GAGGTCTTCTGATACACTTGCTGGTGGGTTGGGGAAGGATGGGCTCTTCAGATAGACTTG
CTGGTGACGTATACTGCCCCTAGAGGGGTAAGGAGTGGGCCACATACCACAGGAAGGAGT
AAGCCAAGTGGCTGGGGTGGGGAGATCCTCAGGAACATTGTAACAATTACAGTGAGACAG
GTGGGATGATAAGGGTCTGGTGATTCTTATCTCAGCCAGAGGCTTTTTGAGTTGTATCCC
CTTGGAGAGGACTTGAAGTCCCACAATGAACTGTGCTTTGAGATTTTGTGGCAGCTTTTA
AAGACCAAATCTCAGGATGTGTCTTGAATTATCCAGCCAAAATTGTGGCTTGTTTTCAAG
AGAAGCAGATTGAGATGGAAGTAAACTATGCTAGACCGCAAAGACAGTGTCTCAAATTCT
GGAAACATATGTGTGGATCCCAGAGCTATCCTGAAATTTTTGCTCTGTAAAAAAATTGTT
TGAGTCTACACAGCTCTGTGAATGAACTTTTTCTTTATGAAACTGCTAAATTAAAGCTAA
GAGCCATCTTTAGTGGTGTAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGGGATGCAGAGACCAGGGAGGAGCCGTCTTGAAACAACAGTAGTGCAGCCTTGGG
GCAGGGTCCTAGTTTAACAATCTCTTTGAGTTCTTCTGCAGAACTAAAACCCCCAACAAA
TAGAAGATGTTGAAGAAGCATCAGCTTTGAAAAACAATGAAAGCCATGACGGGAGCTCCA
AGAAAAGACAAGTTTATTGAGGCAAGAGACAGTGTTAACACAGTAGGCCGAATTCCTGAT
AATCAGGGAGAGCCAACCTTGGGTACATGGGTGTGCCTGTTTTTATAGCCCAGAGACCAA
GGAGTTCGAGGCGAGGTCTTGCCATATACCTGTTGACCTGCTGATTGGTCGGGGAAGAAT
GAGGTCTTCTGATACACTTGCTGGTGGGTTGGGGAAGGATGGGCTCTTCAGATAGACTTG
CTGGTGACGTATACTGCCCCTAGAGGGGTAAGGAGTGGGCCACATACCACAGGAAGGAGT
AAGCCAAGTGGCTGGGGTGGGGAGATCCTCAGGAACATTGTAACAATTACAGTGAGACAG
GTGGGATGATAAGGGTCTGGTGATTCTTATCTCAGCCAGAGGCTTTTTGAGTTGTATCCC
CTTGGAGAGGACTTGAAGTCCCACAATGAACTGTGCTTTGAGATTTTGTGGCAGCTTTTA
AAGACCAAATCTCAGGATGTGTCTTGAATTATCCAGCCAAAATTGTGGCTTGTTTTCAAG
AGAAGCAGATTGAGATGGAAGTAAACTATGCTAGACCGCAAAGACAGTGTCTCAAATTCT
GGAAACATATGTGTGGATCCCAGAGCTATCCTGAAATTTTTGCTCTGTAAAAAAATTGTT
TGAGTCTACACAGCTCTGTGAATGAACTTTTTCTTTATGAAACTGCTAAATTAAAGCTAA
GAGCCATCTTTAGTGGTGTAAGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               745-864, - strand, RNAz p=0.628515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               745-864, - strand, RNAz p=0.628515

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               626-924, gnl|bosTau2|chr15 (14307904-14308188)
               

               
               626-924, gnl|Hg17|chr11 (118494971-118495264)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               626-924, gnl|bosTau2|chr15 (14307904-14308188)
               

               
               626-924, gnl|Hg17|chr11 (118494971-118495264)

	626-924, gnl\|bosTau2\|chr15 (14307904-14308188)
	626-924, gnl\|Hg17\|chr11 (118494971-118495264)