Non-Coding RNA Search

Ss1.1-Pig3-SRG8013H22.5

Sequence:


               
               CTAGAAGGGAAGATGAAGGGTCCTAAAGTCAAGCCTCCTGAAATGATTATTCAGAAACCT
AAAATCTCAATGCAGGATGTGGATCTGAGCCTTGGGTCCCCTAAACTGAAAGGAGACATT
AAGGTTTCTGCTCCTGGGGTGCAAGGTGACCTTAAAGGCCCTCAAGTGGCAGTTAAGGGC
ACCAAACTGGACATAGAGACACCCATCCTATAGGGGACTGTGACAGGCCCCAAGCTTATT
GGGCCTTCTGGTAAAGCAGGAACCTGCAGGATCGCTATGGCAGATGTGGACCTAAACGCT
GCTACGCCAAAAGTGAAAGGGGGTGTAGAGGTCGTCCTTCCAAAAGTGGAGGGGAAAGTC
ACTGTCCCCGACATTGATGTCAAACGCCCCAAAGTGGAGGTCAGTGCCCCGGATGTGGAC
GTTCATGGCCCCGATTGGAACTTGAAAATGCCCAAGATGAAAATGCCCAAGTTCAGCACT
CCAGGAGTCAAAGGGGAAGGGCCAGATGTAGACGTGAAGCTCCCCAAAGGAGATGTCAGT
ATTTCAGGGCCCAAGGTCAACGTGGAAGCCCCAGATGTCAACATCGGGGGCCTGGCGGGC
AACCTTAAAGGCCCTGATGTTAAGCTACCTGAGGTGAGTGTCAAGACACCAAAGATTTCC
ATGCCTGATGTGGATTTGCATGTGAAAGGCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGAAGGGAAGATGAAGGGTCCTAAAGTCAAGCCTCCTGAAATGATTATTCAGAAACCT
AAAATCTCAATGCAGGATGTGGATCTGAGCCTTGGGTCCCCTAAACTGAAAGGAGACATT
AAGGTTTCTGCTCCTGGGGTGCAAGGTGACCTTAAAGGCCCTCAAGTGGCAGTTAAGGGC
ACCAAACTGGACATAGAGACACCCATCCTATAGGGGACTGTGACAGGCCCCAAGCTTATT
GGGCCTTCTGGTAAAGCAGGAACCTGCAGGATCGCTATGGCAGATGTGGACCTAAACGCT
GCTACGCCAAAAGTGAAAGGGGGTGTAGAGGTCGTCCTTCCAAAAGTGGAGGGGAAAGTC
ACTGTCCCCGACATTGATGTCAAACGCCCCAAAGTGGAGGTCAGTGCCCCGGATGTGGAC
GTTCATGGCCCCGATTGGAACTTGAAAATGCCCAAGATGAAAATGCCCAAGTTCAGCACT
CCAGGAGTCAAAGGGGAAGGGCCAGATGTAGACGTGAAGCTCCCCAAAGGAGATGTCAGT
ATTTCAGGGCCCAAGGTCAACGTGGAAGCCCCAGATGTCAACATCGGGGGCCTGGCGGGC
AACCTTAAAGGCCCTGATGTTAAGCTACCTGAGGTGAGTGTCAAGACACCAAAGATTTCC
ATGCCTGATGTGGATTTGCATGTGAAAGGCCCAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-279, - strand, RNAz p=0.734216
               

               
               520-639, - strand, RNAz p=0.801856

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-279, - strand, RNAz p=0.734216
               

               
               520-639, - strand, RNAz p=0.801856

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               52-130, + strand, RNAmicro p=0.981506

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               52-130, + strand, RNAmicro p=0.981506

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr29 (31999713-31999018)
               

               
               1-696, gnl|Hg17|chr11 (62057030-62056335)
               

               
               1-696, gnl|Mm7|chr19 (8682968-8683648)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr29 (31999713-31999018)
               

               
               1-696, gnl|Hg17|chr11 (62057030-62056335)
               

               
               1-696, gnl|Mm7|chr19 (8682968-8683648)

	80-279, - strand, RNAz p=0.734216
	520-639, - strand, RNAz p=0.801856

	1-696, gnl\|bosTau2\|chr29 (31999713-31999018)
	1-696, gnl\|Hg17\|chr11 (62057030-62056335)
	1-696, gnl\|Mm7\|chr19 (8682968-8683648)