Non-Coding RNA Search

Ss1.1-Pig3-SRG8013L20.5

Sequence:


               
               CTCTAATTAGCGGCCCTGCTCCGTGGTGCGTCCCGAGTGTCGGGCACACATCACGTGACC
TCCTGGTCCTTCCGTTTTGGGTGAGGCTGCTTCTCTCTGATCACATGCCAGCTTTCCAGG
TTCCCGCAGCAGCCGATTGCTCTCTCCCCACATGGCCCCCACTGTCCCCACCANACACCA
CCTCACCTGTGAGTGGGCCTGCTCTTCTTGGCCGCTGGCCTTGGGCTCTTCACCTATCCC
TGCTGAGCAGATAGAAGCAATGAGAGCGGTGCCCTTCCTGCAGCCTCCTGTCACTTTGAG
TGGCTCACCAAACCGATGCCCTTTGTTTAATACCTTTCAAACTCCGAACAAACCATGGGC
AGCGTTGGGAAAAGATGGGGGTCAGACGTGGTCACAGGAGCCTACGTGACCTGCTAGGTT
TGGAAGCACAGGGAGGTGGGCTCTCAGGGGGAACGCAGGCCCCCACAACTCATGGATGCT
GGAGATTGCTCAGGTCATAGCCACGTGATTCTTGAACTCATTTGGGAAAGCCAGAAGTTC
AAGTGACATTTCGTTAAAGTCATTAACTTAAAGACCATGATCAAATTGGGGGTAATGATG
ACAGATGGTATTTAATACTGCCTCCAGCTTTTTTTTTCCCCCCCACAGCAATATTATTCC
CTAATACTATTTCAGTCTCATTTATCTCCTTGTGCTAAAATGCCAGTACTCAGAAATATG
TCAAAAGCTCATCAGGATATCAGGGTAGCTTTTAATTATGATAATTGTGTTGTTATAAAA
TATCCTTTTAAAGAGCACATCCCTCCTCAAGCCGCCGTAGAGGTAACACCCCGCTTCCTC
CCAGCGAGCTGAATGAATAATTCTGAATCATTGTGTGGGATGAATAAATGATTTAATAAC
GAGCGTCAACAATCATCTCACATTGTTGCATTAATTTGTTAAATGGGATGAGGTAAAGGA
GGAGGAGGGATGTTACCATACAACGGGCCACCGTGTGTGGGGATGCATTCTGTGAGGCAA
AGCCTCCAGCTTCAGCGAGCTCAGGTTTCCTTAGAAACGGAGGCATTCGGTGTCTATTTT
GAGGCTCAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAATTAGCGGCCCTGCTCCGTGGTGCGTCCCGAGTGTCGGGCACACATCACGTGACC
TCCTGGTCCTTCCGTTTTGGGTGAGGCTGCTTCTCTCTGATCACATGCCAGCTTTCCAGG
TTCCCGCAGCAGCCGATTGCTCTCTCCCCACATGGCCCCCACTGTCCCCACCANACACCA
CCTCACCTGTGAGTGGGCCTGCTCTTCTTGGCCGCTGGCCTTGGGCTCTTCACCTATCCC
TGCTGAGCAGATAGAAGCAATGAGAGCGGTGCCCTTCCTGCAGCCTCCTGTCACTTTGAG
TGGCTCACCAAACCGATGCCCTTTGTTTAATACCTTTCAAACTCCGAACAAACCATGGGC
AGCGTTGGGAAAAGATGGGGGTCAGACGTGGTCACAGGAGCCTACGTGACCTGCTAGGTT
TGGAAGCACAGGGAGGTGGGCTCTCAGGGGGAACGCAGGCCCCCACAACTCATGGATGCT
GGAGATTGCTCAGGTCATAGCCACGTGATTCTTGAACTCATTTGGGAAAGCCAGAAGTTC
AAGTGACATTTCGTTAAAGTCATTAACTTAAAGACCATGATCAAATTGGGGGTAATGATG
ACAGATGGTATTTAATACTGCCTCCAGCTTTTTTTTTCCCCCCCACAGCAATATTATTCC
CTAATACTATTTCAGTCTCATTTATCTCCTTGTGCTAAAATGCCAGTACTCAGAAATATG
TCAAAAGCTCATCAGGATATCAGGGTAGCTTTTAATTATGATAATTGTGTTGTTATAAAA
TATCCTTTTAAAGAGCACATCCCTCCTCAAGCCGCCGTAGAGGTAACACCCCGCTTCCTC
CCAGCGAGCTGAATGAATAATTCTGAATCATTGTGTGGGATGAATAAATGATTTAATAAC
GAGCGTCAACAATCATCTCACATTGTTGCATTAATTTGTTAAATGGGATGAGGTAAAGGA
GGAGGAGGGATGTTACCATACAACGGGCCACCGTGTGTGGGGATGCATTCTGTGAGGCAA
AGCCTCCAGCTTCAGCGAGCTCAGGTTTCCTTAGAAACGGAGGCATTCGGTGTCTATTTT
GAGGCTCAATCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               586-705, - strand, RNAz p=0.979564
               

               
               976-1089, + strand, RNAz p=0.662423

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               586-705, - strand, RNAz p=0.979564
               

               
               976-1089, + strand, RNAz p=0.662423

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               620-721, + strand, RNAmicro p=0.999999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               620-721, + strand, RNAmicro p=0.999999

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-1089, gnl|bosTau2|chr25 (11130537-11129452)
               

               
               19-1089, gnl|Hg17|chr16 (12701765-12700707)
               

               
               19-1089, gnl|Mm7|chr16 (11376255-11375344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1089, gnl|bosTau2|chr25 (11130537-11129452)
               

               
               19-1089, gnl|Hg17|chr16 (12701765-12700707)
               

               
               19-1089, gnl|Mm7|chr16 (11376255-11375344)

	586-705, - strand, RNAz p=0.979564
	976-1089, + strand, RNAz p=0.662423

	19-1089, gnl\|bosTau2\|chr25 (11130537-11129452)
	19-1089, gnl\|Hg17\|chr16 (12701765-12700707)
	19-1089, gnl\|Mm7\|chr16 (11376255-11375344)