Non-Coding RNA Search

Ss1.1-Pig3-SRG8013P08.3

Sequence:


               
               GACAATGTTACAGGTGGCATGGAGACATCTCGCCAAACCTATGATGACAAGCTCACAGCA
GTGGAAAGCGACCTGAAAAAATTAGGGGACCAGACGGGGAAGAAAGCTCTCAGCACCACC
TCAGAACTCTCCACCTTCAGATCAGACATCCTGGACCTTCGTCAGCAACTTCGTGAGATT
ACGGAAAAGACCAGCAAGAACAAAGATACTCTGGAGAAGTTGCAGGCGAGCGGCGATGCG
CTGGTGGACCGGCAGAGTCAACTGAAAGAAACTTTGGAGAATAACTCTTTCCTCATCACC
ACTGTCAACAAAACCCTCCAGGCCTACAATGGCTATGTCACGAATCTGCAGCAAGACACA
AGCGTGCTGCAGGGCAATCTGCAGAGCCAAATGTATTCTCACAACGTGGTTGTCATGAAC
CTCAACAACCTCAACTTGACCCAGGTGCAGCAGAGGAATCTCATCACGAGTCTGCAGCGC
TCCGTGGATGACACAAGCCAGGCAATCCAGCGGATCAAGAATGACTTCCAAAACTTACAG
CAGGTTTTCCTTCAAGCCAAGAAGGACACAGACTGGCTGAAGGAGAAGGTGCAGAGCTTG
CAGACGCTGGCTGCCAATAACTCCGCCTTGGCCAAGGCCAACAACGATACCCTGGAGGAC
ATGAACAGCCAGCTGGGCTCTTTTGCGGGGCAGATGGACAACATCACCACGGCCTCCCAA
GCCAACGAGCAGAACCTGAAAGACCTGCAGGATGTACACAGGGATGCAGAGAACAGAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAATGTTACAGGTGGCATGGAGACATCTCGCCAAACCTATGATGACAAGCTCACAGCA
GTGGAAAGCGACCTGAAAAAATTAGGGGACCAGACGGGGAAGAAAGCTCTCAGCACCACC
TCAGAACTCTCCACCTTCAGATCAGACATCCTGGACCTTCGTCAGCAACTTCGTGAGATT
ACGGAAAAGACCAGCAAGAACAAAGATACTCTGGAGAAGTTGCAGGCGAGCGGCGATGCG
CTGGTGGACCGGCAGAGTCAACTGAAAGAAACTTTGGAGAATAACTCTTTCCTCATCACC
ACTGTCAACAAAACCCTCCAGGCCTACAATGGCTATGTCACGAATCTGCAGCAAGACACA
AGCGTGCTGCAGGGCAATCTGCAGAGCCAAATGTATTCTCACAACGTGGTTGTCATGAAC
CTCAACAACCTCAACTTGACCCAGGTGCAGCAGAGGAATCTCATCACGAGTCTGCAGCGC
TCCGTGGATGACACAAGCCAGGCAATCCAGCGGATCAAGAATGACTTCCAAAACTTACAG
CAGGTTTTCCTTCAAGCCAAGAAGGACACAGACTGGCTGAAGGAGAAGGTGCAGAGCTTG
CAGACGCTGGCTGCCAATAACTCCGCCTTGGCCAAGGCCAACAACGATACCCTGGAGGAC
ATGAACAGCCAGCTGGGCTCTTTTGCGGGGCAGATGGACAACATCACCACGGCCTCCCAA
GCCAACGAGCAGAACCTGAAAGACCTGCAGGATGTACACAGGGATGCAGAGAACAGAACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40645074|dbj|BAD06456.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40645074|dbj|BAD06456.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               163-282, - strand, RNAz p=0.578086
               

               
               363-722, - strand, RNAz p=0.965872

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-282, - strand, RNAz p=0.578086
               

               
               363-722, - strand, RNAz p=0.965872

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               84-780, gnl|bosTau2|chr24 (25674829-25674133)
               

               
               84-780, gnl|Hg17|chr18 (337343-336647)
               

               
               84-780, gnl|Mm7|chr18 (10054652-10055348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-780, gnl|bosTau2|chr24 (25674829-25674133)
               

               
               84-780, gnl|Hg17|chr18 (337343-336647)
               

               
               84-780, gnl|Mm7|chr18 (10054652-10055348)

	163-282, - strand, RNAz p=0.578086
	363-722, - strand, RNAz p=0.965872

	84-780, gnl\|bosTau2\|chr24 (25674829-25674133)
	84-780, gnl\|Hg17\|chr18 (337343-336647)
	84-780, gnl\|Mm7\|chr18 (10054652-10055348)