Non-Coding RNA Search

Ss1.1-Pig3-SRG8014C11.3

Sequence:


               
               AGTTGGATTCGTTTCCGCTGCGCCCTGGCAGGAACTCCTCGTGGGGTTTTAAAGGAGTTC
ATTGCTGTGCCTGAACTCTGCGGAACAGGACAAGTGTGTTGCACGTGAGATGCTGTGACT
CTGCCACCCCCGCCCCCCGCCACGTCCCTGTGGGCCAGTTCATCTCTTTCGTACTTCCAG
TAGAAACTTTGGGGAAAGCTGGAAGGGGAGGAGTGGTGAAATTGTACATGGGGGGGGAAT
TGAGTATCAGCCATTTAAACAAGTACTTTGGAATGTTCATCTTTAGGTTTTTGGATAGGA
AATTTCCCTGGCTTCTGTCTTGGAGGATCTGAAATGCCTCACTTTCTTCACACTCGTCCG
TTGAATTGAGCCCCGTGCGAGGGACGCCAGGTTAAGACGATCGGCTTGCTTCCCTCGAGC
GTCTCAGCATCTCAGTGCTTGTGTGTTTGAGAGCCTCCTCGGTGTTAGTTGAGAATGTTA
TTGACATAGGATTTTTTTAAAGACCTGCAGATCTTTTGACAAGTCCCTTTATCCCTGAAG
TTTTGTCTTGATTGAGGTACCAAGACAGAATTATTGTTTTGCCCTAGAATTATTATTTTT
TTTTCTCCCCAGGATTCACTTTTAAAGAAAGATTTCAAAATACTTGTTCCTTTCAATAGT
GATATTATCAAGAAAAATTCTTGTTTCCCTCAAAATACCCAATGGCCTTTAAAACGCCTG
TTGGAGCATCTTCCATTGCTTTTGTGTTGGCTGTAACTGTTGGAAACAAATGTCCATATT
AAGTGGCTGTCAAGAAAATATTTTTTAAAAATAAATTTTGCCCGACAGGGAGGAGAAGAT
TTGAATTTCGTAGCAAACCCCTCTCAGAAGCTCCCCCCTCCGCAGAGCCCCGGCCGGTGA
CCACATGCTCTCTAAGCAGGTGTTCCGTGTTCTAGGGAAAGAAGCTCAGAAAGGATCTCT
GCTCTTTGACGGCCTCCCTCCAGCCAGCAGTGCTGACTCAGGTACAGTCTTCAGGCTCTC
CCAGGTGTGTGTCAGCGTGCCCTCCTGGGATTGTAGTGGTCTCAATCTTTTTCCCTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGGATTCGTTTCCGCTGCGCCCTGGCAGGAACTCCTCGTGGGGTTTTAAAGGAGTTC
ATTGCTGTGCCTGAACTCTGCGGAACAGGACAAGTGTGTTGCACGTGAGATGCTGTGACT
CTGCCACCCCCGCCCCCCGCCACGTCCCTGTGGGCCAGTTCATCTCTTTCGTACTTCCAG
TAGAAACTTTGGGGAAAGCTGGAAGGGGAGGAGTGGTGAAATTGTACATGGGGGGGGAAT
TGAGTATCAGCCATTTAAACAAGTACTTTGGAATGTTCATCTTTAGGTTTTTGGATAGGA
AATTTCCCTGGCTTCTGTCTTGGAGGATCTGAAATGCCTCACTTTCTTCACACTCGTCCG
TTGAATTGAGCCCCGTGCGAGGGACGCCAGGTTAAGACGATCGGCTTGCTTCCCTCGAGC
GTCTCAGCATCTCAGTGCTTGTGTGTTTGAGAGCCTCCTCGGTGTTAGTTGAGAATGTTA
TTGACATAGGATTTTTTTAAAGACCTGCAGATCTTTTGACAAGTCCCTTTATCCCTGAAG
TTTTGTCTTGATTGAGGTACCAAGACAGAATTATTGTTTTGCCCTAGAATTATTATTTTT
TTTTCTCCCCAGGATTCACTTTTAAAGAAAGATTTCAAAATACTTGTTCCTTTCAATAGT
GATATTATCAAGAAAAATTCTTGTTTCCCTCAAAATACCCAATGGCCTTTAAAACGCCTG
TTGGAGCATCTTCCATTGCTTTTGTGTTGGCTGTAACTGTTGGAAACAAATGTCCATATT
AAGTGGCTGTCAAGAAAATATTTTTTAAAAATAAATTTTGCCCGACAGGGAGGAGAAGAT
TTGAATTTCGTAGCAAACCCCTCTCAGAAGCTCCCCCCTCCGCAGAGCCCCGGCCGGTGA
CCACATGCTCTCTAAGCAGGTGTTCCGTGTTCTAGGGAAAGAAGCTCAGAAAGGATCTCT
GCTCTTTGACGGCCTCCCTCCAGCCAGCAGTGCTGACTCAGGTACAGTCTTCAGGCTCTC
CCAGGTGTGTGTCAGCGTGCCCTCCTGGGATTGTAGTGGTCTCAATCTTTTTCCCTTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29171687|ref|NP_789769.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29171687|ref|NP_789769.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-569, - strand, RNAz p=0.618716

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-569, - strand, RNAz p=0.618716

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               41-1080, gnl|bosTau2|chr3 (84585283-84584262)
               

               
               41-1080, gnl|Hg17|chr2 (238887190-238885362)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-1080, gnl|bosTau2|chr3 (84585283-84584262)
               

               
               41-1080, gnl|Hg17|chr2 (238887190-238885362)

	41-1080, gnl\|bosTau2\|chr3 (84585283-84584262)
	41-1080, gnl\|Hg17\|chr2 (238887190-238885362)