Non-Coding RNA Search

Ss1.1-Pig3-SRG8014F11.5

Sequence:


               
               GGGAGTTCCCCCTTCCCCCATTTTTATGGCTTAAGATAGTCTTAATACAAAAGCTTACTT
AATTACATTCAGATTTTTTCTGCCTCTCATCTCCATGAAACTATAAAGGGAGCAGGGAAC
TTGGGCAGAGACTGCTTGAAAATTTGGGCAGAGATCTTAAAGCAGTGCAGTGTGGGCTTG
GGCTGCATCATACACACATGAGCCTTATTACAGTCCCTTTGCAACCTCGTACAGCAGTTG
CCATGAGTTAAGCTGCAAACTCGGCTTCCTTTTGGTTCCAAAGCTCAGCTGCTTGTGCAT
ATTTCTCTCAACCTTGGGCTGGTTGGGTTAATCCCACCCTTCCCCTACAAGGTAGCTCTG
CAAGTACCTTCTCCCTCCCATGTCTCCTTCTCAAGTCAAGTTCTCTACTCCTATGAGCAT
CGGCTCTTCCTCTTCTTTTCACAGGGTCCCGACTTGTCCTGGGCAAGCCAGCCCTTTGCT
TCTGCTCCTGAGAAGTGCCAAGATTCTGCAGCGCTGACTCCAACTGCCTTCTCATGCCTA
TACTTTGGGCTGCTTTCCGGATACCTGCATAAGCAAGCCCTTGTCACTGCTACCCATTCC
TACCTGCACCCTGCTTTTTCCTTCTTGCCACATTTGTGTTCCTTTCTCCCCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTTCCCCCTTCCCCCATTTTTATGGCTTAAGATAGTCTTAATACAAAAGCTTACTT
AATTACATTCAGATTTTTTCTGCCTCTCATCTCCATGAAACTATAAAGGGAGCAGGGAAC
TTGGGCAGAGACTGCTTGAAAATTTGGGCAGAGATCTTAAAGCAGTGCAGTGTGGGCTTG
GGCTGCATCATACACACATGAGCCTTATTACAGTCCCTTTGCAACCTCGTACAGCAGTTG
CCATGAGTTAAGCTGCAAACTCGGCTTCCTTTTGGTTCCAAAGCTCAGCTGCTTGTGCAT
ATTTCTCTCAACCTTGGGCTGGTTGGGTTAATCCCACCCTTCCCCTACAAGGTAGCTCTG
CAAGTACCTTCTCCCTCCCATGTCTCCTTCTCAAGTCAAGTTCTCTACTCCTATGAGCAT
CGGCTCTTCCTCTTCTTTTCACAGGGTCCCGACTTGTCCTGGGCAAGCCAGCCCTTTGCT
TCTGCTCCTGAGAAGTGCCAAGATTCTGCAGCGCTGACTCCAACTGCCTTCTCATGCCTA
TACTTTGGGCTGCTTTCCGGATACCTGCATAAGCAAGCCCTTGTCACTGCTACCCATTCC
TACCTGCACCCTGCTTTTTCCTTCTTGCCACATTTGTGTTCCTTTCTCCCCCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-412, - strand, RNAz p=0.917352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-412, - strand, RNAz p=0.917352

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-652, gnl|bosTau2|chrX (18600961-18601601)
               

               
               9-652, gnl|Hg17|chrX (110756938-110757605)
               

               
               9-652, gnl|Mm7|chrX (139000043-139000630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-652, gnl|bosTau2|chrX (18600961-18601601)
               

               
               9-652, gnl|Hg17|chrX (110756938-110757605)
               

               
               9-652, gnl|Mm7|chrX (139000043-139000630)

	9-652, gnl\|bosTau2\|chrX (18600961-18601601)
	9-652, gnl\|Hg17\|chrX (110756938-110757605)
	9-652, gnl\|Mm7\|chrX (139000043-139000630)