Non-Coding RNA Search

Ss1.1-Pig3-SRG8014I12.3

Sequence:


               
               CATGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTAAAGTATGCATATGATAGCTCACCTGG
TCCATCAGTCTCATTTTATAAGTAGAGACACGTGTAATTGTTCATGTTTTTGCAATTTAT
AGGGGTCTTTATCACATCTACCCCAAAGAGCAGATGTTTTAAGCATGTTCATTAAAAATG
GTTATTTCAAAAGGACTAATTTACCTCAATCAAATAGACTCTGATTCTGACAGTTGAATT
CTGATAGGTGATGCATATGTAGCCTCGTCTTCTGAAAGGCAGCTATTTTGCATAGTTCAC
ATCTGATTCACATGTAAAAGAATGAGTGGCCTACTTAGCTTTCAGAAATTCTCCCTCCAC
CAGTGCAGACACGCCCCACCCCAGGGCCTTCATTCTTATCATCACCTTGGCCTGGAACTC
CCTTGGCCCACCAAGGGTGCCAGGCTCACCTTATCATCTCCATCCAGCCTTTACTCACAC
AAGACTTTAGTAAGGCCACCCTATCTAAAATTGCAAACCCTGGAGGGGTTCCCTCGTGGC
TCAGCAGGTTAAGGCTCCAACTTTGTCACTGCTGTGGCATAGGTTTGA------------
------------------------GCCAAAAAAATTAAATAAATAAGTAAAATTGCAAAC
CTTAAAAAATAAATAAATAAATAGATAACTAGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTAAAGTATGCATATGATAGCTCACCTGG
TCCATCAGTCTCATTTTATAAGTAGAGACACGTGTAATTGTTCATGTTTTTGCAATTTAT
AGGGGTCTTTATCACATCTACCCCAAAGAGCAGATGTTTTAAGCATGTTCATTAAAAATG
GTTATTTCAAAAGGACTAATTTACCTCAATCAAATAGACTCTGATTCTGACAGTTGAATT
CTGATAGGTGATGCATATGTAGCCTCGTCTTCTGAAAGGCAGCTATTTTGCATAGTTCAC
ATCTGATTCACATGTAAAAGAATGAGTGGCCTACTTAGCTTTCAGAAATTCTCCCTCCAC
CAGTGCAGACACGCCCCACCCCAGGGCCTTCATTCTTATCATCACCTTGGCCTGGAACTC
CCTTGGCCCACCAAGGGTGCCAGGCTCACCTTATCATCTCCATCCAGCCTTTACTCACAC
AAGACTTTAGTAAGGCCACCCTATCTAAAATTGCAAACCCTGGAGGGGTTCCCTCGTGGC
TCAGCAGGTTAAGGCTCCAACTTTGTCACTGCTGTGGCATAGGTTTGA------------
------------------------GCCAAAAAAATTAAATAAATAAGTAAAATTGCAAAC
CTTAAAAAATAAATAAATAAATAGATAACTAGAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               296-521, - strand, RNAz p=0.994263

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-521, - strand, RNAz p=0.994263

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               24-521, gnl|bosTau2|chr25 (15359099-15358602)
               

               
               24-521, gnl|Hg17|chr16 (13927189-13927663)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-521, gnl|bosTau2|chr25 (15359099-15358602)
               

               
               24-521, gnl|Hg17|chr16 (13927189-13927663)

	24-521, gnl\|bosTau2\|chr25 (15359099-15358602)
	24-521, gnl\|Hg17\|chr16 (13927189-13927663)