Ss1.1-Pig3-SRG8014N05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCAAGGCAGAGAAACATGTGCACACTTTCATGATGGACACTCAGCTCACCAAGCGGGT TAAAAACGCCGCTGCTAATGTTCTCAGGGAGACGTGGCTCATCTACAAACATACCAGGCT GGTGAAGAAGCCAGACCACGCCCGGGTTCGGAAACACCAGCGTAAGTTCCTCCAAGCCAT CCATCAGTAAGTCCAGCACCTTTCCCACTTGATTGGGGCCTGTAGCTTCTGTGTTGGGTG GGAGGGTGGGATGATTAGAGGGGGACAGTGATGAGCCCAGTACTTATCCAGGACAGTCAC CTCTGATAAATTATGCAAACCACCCAATATAAGTGGCAGGAAGCATGTATTATTCTCTGG AATAGCTCTTGGACATTGAAGCAATTTCCCGTCTTTGCTCTGGCTTCTAGGAAGCTTACA ATTAAATTTATGGCCTAATTCATGTGATCATGTGAGGTAATTAGAGATTACATGATTTCC TCTGTTGTTCCTTTGTCCTGAGAACTATTTAATCAAGTGGTTCTCATCTTTGGCTGCTCA TTGGAGTCACCTGGTGGGGGAGCTTTTTAAAATCCC------------------------ ------------------------------------------------------------ ------------------------------------GAGCTCAGCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCAAGGCAGAGAAACATGTGCACACTTTCATGATGGACACTCAGCTCACCAAGCGGGT TAAAAACGCCGCTGCTAATGTTCTCAGGGAGACGTGGCTCATCTACAAACATACCAGGCT GGTGAAGAAGCCAGACCACGCCCGGGTTCGGAAACACCAGCGTAAGTTCCTCCAAGCCAT CCATCAGTAAGTCCAGCACCTTTCCCACTTGATTGGGGCCTGTAGCTTCTGTGTTGGGTG GGAGGGTGGGATGATTAGAGGGGGACAGTGATGAGCCCAGTACTTATCCAGGACAGTCAC CTCTGATAAATTATGCAAACCACCCAATATAAGTGGCAGGAAGCATGTATTATTCTCTGG AATAGCTCTTGGACATTGAAGCAATTTCCCGTCTTTGCTCTGGCTTCTAGGAAGCTTACA ATTAAATTTATGGCCTAATTCATGTGATCATGTGAGGTAATTAGAGATTACATGATTTCC TCTGTTGTTCCTTTGTCCTGAGAACTATTTAATCAAGTGGTTCTCATCTTTGGCTGCTCA TTGGAGTCACCTGGTGGGGGAGCTTTTTAAAATCCC------------------------ ------------------------------------------------------------ ------------------------------------GAGCTCAGCTAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 425-576, - strand, RNAz p=0.979396 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 425-576, - strand, RNAz p=0.979396 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 58-205, gnl|bosTau2|chr7 (4449543-4449396) | |
| 58-205, gnl|canFam2|chr20 (47948983-47948826) | |
| 58-205, gnl|danRer3|chr8 (5921419-5921272) | |
| 58-205, gnl|dasNov1|scaffold_1593 (87637-87787) | |
| 58-205, gnl|echTel1|scaffold_234019 (2869-3025) | |
| 58-205, gnl|fr1|chrUn (107440438-107440291) | |
| 58-205, gnl|galGal2|chrUn (16962631-16962780) | |
| 58-205, gnl|hg17|chr19 (17961509-17961666) | |
| 58-205, gnl|Hg17|chr19 (17961524-17961671) | |
| 58-205, gnl|loxAfr1|scaffold_49189 (11775-11931) | |
| 58-205, gnl|mm7|chr8 (69302825-69302668) | |
| 58-205, gnl|Mm7|chr8 (69302808-69302661) | |
| 58-205, gnl|monDom2|scaffold_209 (884172-884337) | |
| 58-205, gnl|oryCun1|scaffold_214692 (6086-5947) | |
| 58-205, gnl|panTro1|chr20 (18954015-18954172) | |
| 58-205, gnl|rheMac2|chr19 (17562733-17562890) | |
| 58-205, gnl|rn3|chr16 (19100447-19100604) | |
| 58-205, gnl|tetNig1|chr1 (14526266-14526123) | |
| 58-205, gnl|xenTro1|scaffold_83 (384721-384577) | |
| 272-576, gnl|bosTau2|chr7 (4449235-4448923) | |
| 272-576, gnl|canFam2|chr20 (47948665-47948433) | |
| 272-576, gnl|hg17|chr19 (17961798-17962012) | |
| 272-576, gnl|Hg17|chr19 (17961800-17962759) | |
| 272-576, gnl|loxAfr1|scaffold_49189 (12094-12380) | |
| 272-576, gnl|panTro1|chr20 (18954304-18954518) | |
| 272-576, gnl|rheMac2|chr19 (17563022-17563236) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-205, gnl|bosTau2|chr7 (4449543-4449396) | |
| 58-205, gnl|canFam2|chr20 (47948983-47948826) | |
| 58-205, gnl|danRer3|chr8 (5921419-5921272) | |
| 58-205, gnl|dasNov1|scaffold_1593 (87637-87787) | |
| 58-205, gnl|echTel1|scaffold_234019 (2869-3025) | |
| 58-205, gnl|fr1|chrUn (107440438-107440291) | |
| 58-205, gnl|galGal2|chrUn (16962631-16962780) | |
| 58-205, gnl|hg17|chr19 (17961509-17961666) | |
| 58-205, gnl|Hg17|chr19 (17961524-17961671) | |
| 58-205, gnl|loxAfr1|scaffold_49189 (11775-11931) | |
| 58-205, gnl|mm7|chr8 (69302825-69302668) | |
| 58-205, gnl|Mm7|chr8 (69302808-69302661) | |
| 58-205, gnl|monDom2|scaffold_209 (884172-884337) | |
| 58-205, gnl|oryCun1|scaffold_214692 (6086-5947) | |
| 58-205, gnl|panTro1|chr20 (18954015-18954172) | |
| 58-205, gnl|rheMac2|chr19 (17562733-17562890) | |
| 58-205, gnl|rn3|chr16 (19100447-19100604) | |
| 58-205, gnl|tetNig1|chr1 (14526266-14526123) | |
| 58-205, gnl|xenTro1|scaffold_83 (384721-384577) | |
| 272-576, gnl|bosTau2|chr7 (4449235-4448923) | |
| 272-576, gnl|canFam2|chr20 (47948665-47948433) | |
| 272-576, gnl|hg17|chr19 (17961798-17962012) | |
| 272-576, gnl|Hg17|chr19 (17961800-17962759) | |
| 272-576, gnl|loxAfr1|scaffold_49189 (12094-12380) | |
| 272-576, gnl|panTro1|chr20 (18954304-18954518) | |
| 272-576, gnl|rheMac2|chr19 (17563022-17563236) |