Non-Coding RNA Search

Ss1.1-Pig3-SRG8015A12.5

Sequence:


               
               ATCAGCTTCCCAGCAGAAATTACCATCAGTGATACTCCATTGTATAATCTGGAACCCTGT
GAACCGCTTCCTTTTGATGTGGCACGATTTCGAGGCCTGACGGCTTCTGTGTTACTGGAC
CTCACATATCTGACTGGCATTCATGAAGACATGGGCAAACAGAGCACCAAGCGACATGAA
AAGAAACATCGACATGAATCTGAGGAGAAAGGGGATGTTGAGCAGAAAACTGAAAGTGAA
TCAGCTTTAGATACACGAACAGGCTTAACATCTGACGATGTTAAAAGTCAGGGTACCACA
ATCTCCAAATCAGAAAACGAAATAGCTTCATTTTCTTTAGATTCAGCAATGCCAGCTGTG
GAATCCCAACATCAGATAACAGAAGGAAAAAGAAAAAATCATGAACACGTGTCCAAAAAC
CATGACATAGCCCAGTCAGAAATCAGAGCAGTCCAGCTGTCCTATCTTTACCTCGGTGCT
ATGAAATCACTTAGTGCTCTTCTTGGCTGTAGTAAATATGCTGAGCTGTTGCTGATACCA
AAAGTTTTGGCCGAAAATGGCCACAACTCAGACTGTGCAAGCTCTCCAGTTGTTCATGAA
GATGTGGAGATGCGTGCAGCCCTGCAGTTCTTGATGCGCCACATGGTAAAGCGAGCAGTC
ATGCGGTCACCCATAAAGAGAGCACTGGGATTAGCTGATCTGGAACGAGCTCAAGCCATG
ATCTATAAATTAGTCATCCATGGGCTTTTGGAGGACCAATTGGGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGCTTCCCAGCAGAAATTACCATCAGTGATACTCCATTGTATAATCTGGAACCCTGT
GAACCGCTTCCTTTTGATGTGGCACGATTTCGAGGCCTGACGGCTTCTGTGTTACTGGAC
CTCACATATCTGACTGGCATTCATGAAGACATGGGCAAACAGAGCACCAAGCGACATGAA
AAGAAACATCGACATGAATCTGAGGAGAAAGGGGATGTTGAGCAGAAAACTGAAAGTGAA
TCAGCTTTAGATACACGAACAGGCTTAACATCTGACGATGTTAAAAGTCAGGGTACCACA
ATCTCCAAATCAGAAAACGAAATAGCTTCATTTTCTTTAGATTCAGCAATGCCAGCTGTG
GAATCCCAACATCAGATAACAGAAGGAAAAAGAAAAAATCATGAACACGTGTCCAAAAAC
CATGACATAGCCCAGTCAGAAATCAGAGCAGTCCAGCTGTCCTATCTTTACCTCGGTGCT
ATGAAATCACTTAGTGCTCTTCTTGGCTGTAGTAAATATGCTGAGCTGTTGCTGATACCA
AAAGTTTTGGCCGAAAATGGCCACAACTCAGACTGTGCAAGCTCTCCAGTTGTTCATGAA
GATGTGGAGATGCGTGCAGCCCTGCAGTTCTTGATGCGCCACATGGTAAAGCGAGCAGTC
ATGCGGTCACCCATAAAGAGAGCACTGGGATTAGCTGATCTGGAACGAGCTCAAGCCATG
ATCTATAAATTAGTCATCCATGGGCTTTTGGAGGACCAATTGGGGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12859418|dbj|BAB31647.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12859418|dbj|BAB31647.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-386, - strand, RNAz p=0.996489

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-386, - strand, RNAz p=0.996489

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-768, gnl|bosTau2|chr10 (31631949-31631214)
               

               
               28-768, gnl|Hg17|chr15 (61754347-61753606)
               

               
               28-768, gnl|Mm7|chr9 (66480979-66481720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-768, gnl|bosTau2|chr10 (31631949-31631214)
               

               
               28-768, gnl|Hg17|chr15 (61754347-61753606)
               

               
               28-768, gnl|Mm7|chr9 (66480979-66481720)

	28-768, gnl\|bosTau2\|chr10 (31631949-31631214)
	28-768, gnl\|Hg17\|chr15 (61754347-61753606)
	28-768, gnl\|Mm7\|chr9 (66480979-66481720)