Non-Coding RNA Search

Ss1.1-Pig3-SRG8015B16.5

Sequence:


               
               ACAGGAATTCCTGCAGTCACGTTCTTAACCCACTGCACCACAGTGGGACCTCTCAATTTT
TCTTTTTCTTATGAAAGTAAAAACCCTCATGGACAGCTTCAAGTGGCAGCAATTGCTTCC
CAATGGCAGCAGTCCTCTCTAAGGCCAAGGAAGTGCAGACTTGGGCTCTTGCCTCAAGCT
GCCCTGGCCTCTTCTCTCCCTCCGAGTCTCACTGGATATACACCCTATCCTCTACCAGCA
TCCATTGCCTTCCCTACTGGTGTGCTCTGCTTGTGCAAGGAAGGCACAGGAGGAAGGAAC
CCAGCCCTTCCCAAAGTGACTACCGGTGGCTGTGGAGTGCTTATCATAAGGCTTGTAGAC
CAGAGGGGTCTGTGTCCAGAAATGTTTTATTACTCTGAGAAGTTTAAACATTTTAATTCA
AAGTTGAGACCCCCTTGAAAGAACACCACCAGTATTTATGACTGTGGCTTTCTTATTGAA
GGGTCTGTCCAGTTTTGAAATGCCACAGCAGGACCCTCTGTTCTTTGATTCTGCTGTGTT
ATGAAATCCTGTATTTCTACAGAACCATTTCACTTGTTCAAAGTCAAAGGTCAGAGTGAC
TCAGTGTTATAGGAGCTGGGTGTTTTTGTAGAATGAGCAGTAAATTTATCTCCTAACAAG
GCTGGGCTAATTAAAATTGCACTGCCTGTCTCTGGCAATCATCAGAAAAGGATATCTGTT
TCTTATTTTATTCCTAAGGCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGAATTCCTGCAGTCACGTTCTTAACCCACTGCACCACAGTGGGACCTCTCAATTTT
TCTTTTTCTTATGAAAGTAAAAACCCTCATGGACAGCTTCAAGTGGCAGCAATTGCTTCC
CAATGGCAGCAGTCCTCTCTAAGGCCAAGGAAGTGCAGACTTGGGCTCTTGCCTCAAGCT
GCCCTGGCCTCTTCTCTCCCTCCGAGTCTCACTGGATATACACCCTATCCTCTACCAGCA
TCCATTGCCTTCCCTACTGGTGTGCTCTGCTTGTGCAAGGAAGGCACAGGAGGAAGGAAC
CCAGCCCTTCCCAAAGTGACTACCGGTGGCTGTGGAGTGCTTATCATAAGGCTTGTAGAC
CAGAGGGGTCTGTGTCCAGAAATGTTTTATTACTCTGAGAAGTTTAAACATTTTAATTCA
AAGTTGAGACCCCCTTGAAAGAACACCACCAGTATTTATGACTGTGGCTTTCTTATTGAA
GGGTCTGTCCAGTTTTGAAATGCCACAGCAGGACCCTCTGTTCTTTGATTCTGCTGTGTT
ATGAAATCCTGTATTTCTACAGAACCATTTCACTTGTTCAAAGTCAAAGGTCAGAGTGAC
TCAGTGTTATAGGAGCTGGGTGTTTTTGTAGAATGAGCAGTAAATTTATCTCCTAACAAG
GCTGGGCTAATTAAAATTGCACTGCCTGTCTCTGGCAATCATCAGAAAAGGATATCTGTT
TCTTATTTTATTCCTAAGGCTTAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               121-235, - strand, RNAz p=0.6124
               

               
               396-510, - strand, RNAz p=0.625741

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-235, - strand, RNAz p=0.6124
               

               
               396-510, - strand, RNAz p=0.625741

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               121-742, gnl|bosTau2|chr22 (37740886-37741514)
               

               
               121-742, gnl|Hg17|chr3 (49273230-49273832)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-742, gnl|bosTau2|chr22 (37740886-37741514)
               

               
               121-742, gnl|Hg17|chr3 (49273230-49273832)

	121-235, - strand, RNAz p=0.6124
	396-510, - strand, RNAz p=0.625741

	121-742, gnl\|bosTau2\|chr22 (37740886-37741514)
	121-742, gnl\|Hg17\|chr3 (49273230-49273832)