Non-Coding RNA Search

Ss1.1-Pig3-SRG8015E18.5

Sequence:


               
               GGAAGGCACTGCCTGTTCAAGCCACCGCCTCGTGTAGAGCCAGTGTGGGCATGGGTTTGA
GAGTGCTTGGTCAGACTCGGGTGAACATGAACCTTCTCCAAAGACTAAGCCTCTGGGTGG
TTCTGGCCTCTCACCTCTTTTCCTGGCAGTTTGTGGAGAGTCTACCCTTGGACACCTCAC
CACTTCTTCCAAAGCTAAGCTGCCAATCCCCACCACACACTGGTAGTGACCGCCCTCTAG
GGCTGATCTCCACCCACTTCCCATGTGACCTTGCTCTCTGCTCACTCTTCTCCGGGCCCC
TTTCCCCATCTATATACCAAGGAGGGGCTGGACCAAGCAGTCTTTAACATTTTCAAAGCC
ATCTTCTGTGAAATATCAGTGAACTTTATCCTTGTTACTTCAGTCTCAGAGATGTTGGTT
GAAACAGAGTGTGTGAAGCAAGCATTTAATTAAAGGATTTTTTTGTATGAAAGAATAGAC
ATTACATCTCTTGGGTGCAGAAATGTTAAGACTCTTAGCTTAAGAGTCAAAGCGGTCTTG
GAAGGGTCTCTGGAGGAGAAAGACAAACTCAGCCCTTCAGTGGTTCCCTGTGGCCCTAAC
TCCTTAGATTGGCCATCGAGGACCTGCACAGTCCTTGAGCGTGGGGGCTTGATCTTTGTC
CCTTGACCAGGCACAGTTCCTGCCCGATCAGGCCTGGCATAGAAGCTACTGGTTGGCTGA
CCAGGGGGGTGGATGTAAGGATGGGTGGCTCAATCAGTCAATCTCAAGACTCCCTAAGGA
ATTATGTGGCCCAGTCTTGCCTAGAAGTAAGGGAATTCAGTTTGCCTCTCAAGTCTCCTC
TTGACAACTCTGAAATGACAATATTTTCCAGCCTCCAGACCAATATTTTACACACAGATA
TCACAGACACTAATATGTCAGAAAAGATATATGAGAAGAACCTCCTAAGAGGCACTTCAG
GCAAGCATCCTAACCGTGGCAACAGGTGGCTATGAGACACCGCCCCTTACTGGCCCTCAG
TTTCCCCATTCGTAAAATGAGGCAGTTGGATTAGATAATCCTTGAGTTCATTTCTAGCTC
TAGCATCGCCCTCAGATGTCCTGGTACCTACAGCAGTAACGGGACAGGGGGCATGATGAC
TCCGGGATCTGGGTCAAGTCCACGTCTTGGAGCTTGAAAGAGTCGTGATGATGGTTGTGG
CCCCCTGGAAGATGAACATGGCAGGAACTGGCCGAGAGATTTTTCTGCTGATGGTGAAAC
GTCCTGGCAATTTATACAGGTAGGTTGAGGTAAGTGAGGGGTTGGGCTCTCCCTTGTGGT
CCCCAAGCAGTGTTTCCTTGTAGAATCAGAAGCTTCCAGGACTGTTTTTGTTGGGTGCCA
GCTAGAATCAGCCATTCACATTGACAAAGTAGGTGGACCATCTTTCTGCACACTGTGCTG
GCAGGGCTTCCAGAAAGGCTTTTTGCTTCCCTGTGTTTCATTGTCACTGTGCCTGGAATC
ATTCCTTGCCATAGCCCCCTCGTTCCCTGTCCAGGTAGCATGTTCTCTGCAGATGTTGTG
GTCCTAATGCCATAATCAGCCAGAGCTACAAAGGAAAAGGCGTGTCTGGTTGTGCCGTGG
CTGTAGTGTAGGCCTGCAGCTGCAGATCCAGTTCAGCTATGGGAACTCCCATATGCTGCA
TGTGCAACCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGCACTGCCTGTTCAAGCCACCGCCTCGTGTAGAGCCAGTGTGGGCATGGGTTTGA
GAGTGCTTGGTCAGACTCGGGTGAACATGAACCTTCTCCAAAGACTAAGCCTCTGGGTGG
TTCTGGCCTCTCACCTCTTTTCCTGGCAGTTTGTGGAGAGTCTACCCTTGGACACCTCAC
CACTTCTTCCAAAGCTAAGCTGCCAATCCCCACCACACACTGGTAGTGACCGCCCTCTAG
GGCTGATCTCCACCCACTTCCCATGTGACCTTGCTCTCTGCTCACTCTTCTCCGGGCCCC
TTTCCCCATCTATATACCAAGGAGGGGCTGGACCAAGCAGTCTTTAACATTTTCAAAGCC
ATCTTCTGTGAAATATCAGTGAACTTTATCCTTGTTACTTCAGTCTCAGAGATGTTGGTT
GAAACAGAGTGTGTGAAGCAAGCATTTAATTAAAGGATTTTTTTGTATGAAAGAATAGAC
ATTACATCTCTTGGGTGCAGAAATGTTAAGACTCTTAGCTTAAGAGTCAAAGCGGTCTTG
GAAGGGTCTCTGGAGGAGAAAGACAAACTCAGCCCTTCAGTGGTTCCCTGTGGCCCTAAC
TCCTTAGATTGGCCATCGAGGACCTGCACAGTCCTTGAGCGTGGGGGCTTGATCTTTGTC
CCTTGACCAGGCACAGTTCCTGCCCGATCAGGCCTGGCATAGAAGCTACTGGTTGGCTGA
CCAGGGGGGTGGATGTAAGGATGGGTGGCTCAATCAGTCAATCTCAAGACTCCCTAAGGA
ATTATGTGGCCCAGTCTTGCCTAGAAGTAAGGGAATTCAGTTTGCCTCTCAAGTCTCCTC
TTGACAACTCTGAAATGACAATATTTTCCAGCCTCCAGACCAATATTTTACACACAGATA
TCACAGACACTAATATGTCAGAAAAGATATATGAGAAGAACCTCCTAAGAGGCACTTCAG
GCAAGCATCCTAACCGTGGCAACAGGTGGCTATGAGACACCGCCCCTTACTGGCCCTCAG
TTTCCCCATTCGTAAAATGAGGCAGTTGGATTAGATAATCCTTGAGTTCATTTCTAGCTC
TAGCATCGCCCTCAGATGTCCTGGTACCTACAGCAGTAACGGGACAGGGGGCATGATGAC
TCCGGGATCTGGGTCAAGTCCACGTCTTGGAGCTTGAAAGAGTCGTGATGATGGTTGTGG
CCCCCTGGAAGATGAACATGGCAGGAACTGGCCGAGAGATTTTTCTGCTGATGGTGAAAC
GTCCTGGCAATTTATACAGGTAGGTTGAGGTAAGTGAGGGGTTGGGCTCTCCCTTGTGGT
CCCCAAGCAGTGTTTCCTTGTAGAATCAGAAGCTTCCAGGACTGTTTTTGTTGGGTGCCA
GCTAGAATCAGCCATTCACATTGACAAAGTAGGTGGACCATCTTTCTGCACACTGTGCTG
GCAGGGCTTCCAGAAAGGCTTTTTGCTTCCCTGTGTTTCATTGTCACTGTGCCTGGAATC
ATTCCTTGCCATAGCCCCCTCGTTCCCTGTCCAGGTAGCATGTTCTCTGCAGATGTTGTG
GTCCTAATGCCATAATCAGCCAGAGCTACAAAGGAAAAGGCGTGTCTGGTTGTGCCGTGG
CTGTAGTGTAGGCCTGCAGCTGCAGATCCAGTTCAGCTATGGGAACTCCCATATGCTGCA
TGTGCAACCCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               591-702, - strand, RNAz p=0.986081

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               591-702, - strand, RNAz p=0.986081

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               55-1583, gnl|bosTau2|chr13 (49219947-49221496)
               

               
               55-1583, gnl|Hg17|chr20 (35575373-35570599)
               

               
               55-1583, gnl|Mm7|chr2 (157294224-157289961)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-1583, gnl|bosTau2|chr13 (49219947-49221496)
               

               
               55-1583, gnl|Hg17|chr20 (35575373-35570599)
               

               
               55-1583, gnl|Mm7|chr2 (157294224-157289961)

	55-1583, gnl\|bosTau2\|chr13 (49219947-49221496)
	55-1583, gnl\|Hg17\|chr20 (35575373-35570599)
	55-1583, gnl\|Mm7\|chr2 (157294224-157289961)