Non-Coding RNA Search

Ss1.1-Pig3-SRG8015I08.5

Sequence:


               
               GCGACTGGAGTTTTTTTTTTTTTTTTTTTGTGATTTGGAAATGGAAAAAGTACGATTCTC
GATGGTAAAAGAAAGATTAAGTATTTGTTCAGATTCATTGCAGTCATTCCAAGTAAGAAT
ATTTGAAATTTTCTCCCTCCTTATAATAAAAAACTTTTTTTAAAAAGCACTTTAAGATAC
ACACTCAAAACCCACAAACAATATTTCAGATCTCTGGGAACAAAAGGTTTCAACTGTGAA
ATATACTTTCTGGGTTTGTACCAAACATTATATCTTGATTTGATTTCTGATGGGAAAAAA
AAGTCATTCTGAAAATAACATTCATAACAACGACCATAACGTAATTGGTTTTTTTTTAAA
AAAAAAAAAAACAAAAAACAAAACTTGCTTACATATATAAATGTCTTTATGGAAAACTCT
CTCAATGAATCTGAAGAAAATTCTTCAGAGTTGTCCTGCTAAGACCTGGTTTTATGTGAC
AGATGCGGTAGAAAGACCAAAATGGATTTTTGAAAGGAACATAATGTTATAAAATGGCCT
AGAGTTTAGGCAGGTTAGAAAGTAATTTTGCTACATTTATTTATGCTCGTTCAGTCCCCC
AAACCTTTCCCACAATGTTATTGGATAAAAACTGCAGGAATATCACACAAATTATAAACT
CAAGATGTGCAAATCGCAAGGTTCTTTAAAAGTTCATCTTAAAAAGAAAAACACTGGACA
AAAGTGAGTATTCTTTTTTCCATCCCTTTCCTCTCAGTTCCTCTGCCAGCTCTGCATATG
CTTTTAATTCTTTCTCAAACATCAAAGTGAAGAGTGCCTCCTAGCAGGCTGTACTTGTGG
TCATTCATTGTCACATACTAGTTCATAATTCACATTCATCCCTTTAAACCACATTGAAAC
TTTCAAATCTTGCTCCGTGAGAAACTCTGCAGAGCTGAAATGTAGTTACAGTGTTGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGACTGGAGTTTTTTTTTTTTTTTTTTTGTGATTTGGAAATGGAAAAAGTACGATTCTC
GATGGTAAAAGAAAGATTAAGTATTTGTTCAGATTCATTGCAGTCATTCCAAGTAAGAAT
ATTTGAAATTTTCTCCCTCCTTATAATAAAAAACTTTTTTTAAAAAGCACTTTAAGATAC
ACACTCAAAACCCACAAACAATATTTCAGATCTCTGGGAACAAAAGGTTTCAACTGTGAA
ATATACTTTCTGGGTTTGTACCAAACATTATATCTTGATTTGATTTCTGATGGGAAAAAA
AAGTCATTCTGAAAATAACATTCATAACAACGACCATAACGTAATTGGTTTTTTTTTAAA
AAAAAAAAAAACAAAAAACAAAACTTGCTTACATATATAAATGTCTTTATGGAAAACTCT
CTCAATGAATCTGAAGAAAATTCTTCAGAGTTGTCCTGCTAAGACCTGGTTTTATGTGAC
AGATGCGGTAGAAAGACCAAAATGGATTTTTGAAAGGAACATAATGTTATAAAATGGCCT
AGAGTTTAGGCAGGTTAGAAAGTAATTTTGCTACATTTATTTATGCTCGTTCAGTCCCCC
AAACCTTTCCCACAATGTTATTGGATAAAAACTGCAGGAATATCACACAAATTATAAACT
CAAGATGTGCAAATCGCAAGGTTCTTTAAAAGTTCATCTTAAAAAGAAAAACACTGGACA
AAAGTGAGTATTCTTTTTTCCATCCCTTTCCTCTCAGTTCCTCTGCCAGCTCTGCATATG
CTTTTAATTCTTTCTCAAACATCAAAGTGAAGAGTGCCTCCTAGCAGGCTGTACTTGTGG
TCATTCATTGTCACATACTAGTTCATAATTCACATTCATCCCTTTAAACCACATTGAAAC
TTTCAAATCTTGCTCCGTGAGAAACTCTGCAGAGCTGAAATGTAGTTACAGTGTTGGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               370-640, - strand, RNAz p=0.918945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-640, - strand, RNAz p=0.918945

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000332, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000332, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-960, gnl|bosTau2|chr23 (35915872-35914957)
               

               
               23-960, gnl|Hg17|chr6 (16412382-16413298)
               

               
               23-960, gnl|Mm7|chr13 (45005353-45006226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-960, gnl|bosTau2|chr23 (35915872-35914957)
               

               
               23-960, gnl|Hg17|chr6 (16412382-16413298)
               

               
               23-960, gnl|Mm7|chr13 (45005353-45006226)

	23-960, gnl\|bosTau2\|chr23 (35915872-35914957)
	23-960, gnl\|Hg17\|chr6 (16412382-16413298)
	23-960, gnl\|Mm7\|chr13 (45005353-45006226)