Non-Coding RNA Search

Ss1.1-Pig3-SRG8015I13.5

Sequence:


               
               TCGAGGACAAAAAATTGGCTTTGTTTCTATTTTATGCACAGCCAGACTTGCTCTTATGTT
TGTAATATTTAAAGGAGTTCAATAGGAGGCCCTTGATTCTTTGATCTAATGCCACAGTGC
TGTTTAACGAGAAAGGTTTTTAATATTGTGTGCGATATTGAAAATTTCTGCCAGCTCAGA
CTAATAAATATAATGTGAGATTTACACCTTGGATCCCTTCTTTTATTTCTCGTCCTGAAT
CTGCTCTGCCCACCCGCCTCCCCGGCTGAAACAGGTAATTACAAAGGTCCTCAGATCAAT
TTTTGTAAAGGGGCACCCTGACGGGTACCATGACTGAAGTGTGACATGAGCCTTTTCCAA
TACAATGGGTGGCCTAACATTCCTCTGGACGCCCAAGCTCATTAAATATTCGGTTCCTTT
TTTCCCCCCCTCTCCCCCCGCCATGCACTTAGCTTGAGTCGCACTAAGTCTGGGGTTTCT
TCATTGAAGACTTAGGAAAATTGCTTCGAGTTCTCAGATTGAATTTTTTATGTGTATGAC
TTCATGATAGCATTAGCATGTGCTTTGATCCATGTGTGAATGGCGCTGGGTCGGCGCTTA
TTGCCATATCCAGATGGTGTTACAGGGAACAAACAGTTGTGTTTTAGGATTCCTCACATA
GACTGTCTAGACTGGCCGTGCAGCAGACAGATACAGCCACCCATCAAATTAGCGTTTGTC
AGATTTATGGTAATGGTTCACCAAAGCCTTCCTGTCATTGACATTAAGATTTACGCCTCC
AAAGTTATTTTGTCTTCCACAGAATATAGCTTGTGATTGCCCGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGGACAAAAAATTGGCTTTGTTTCTATTTTATGCACAGCCAGACTTGCTCTTATGTT
TGTAATATTTAAAGGAGTTCAATAGGAGGCCCTTGATTCTTTGATCTAATGCCACAGTGC
TGTTTAACGAGAAAGGTTTTTAATATTGTGTGCGATATTGAAAATTTCTGCCAGCTCAGA
CTAATAAATATAATGTGAGATTTACACCTTGGATCCCTTCTTTTATTTCTCGTCCTGAAT
CTGCTCTGCCCACCCGCCTCCCCGGCTGAAACAGGTAATTACAAAGGTCCTCAGATCAAT
TTTTGTAAAGGGGCACCCTGACGGGTACCATGACTGAAGTGTGACATGAGCCTTTTCCAA
TACAATGGGTGGCCTAACATTCCTCTGGACGCCCAAGCTCATTAAATATTCGGTTCCTTT
TTTCCCCCCCTCTCCCCCCGCCATGCACTTAGCTTGAGTCGCACTAAGTCTGGGGTTTCT
TCATTGAAGACTTAGGAAAATTGCTTCGAGTTCTCAGATTGAATTTTTTATGTGTATGAC
TTCATGATAGCATTAGCATGTGCTTTGATCCATGTGTGAATGGCGCTGGGTCGGCGCTTA
TTGCCATATCCAGATGGTGTTACAGGGAACAAACAGTTGTGTTTTAGGATTCCTCACATA
GACTGTCTAGACTGGCCGTGCAGCAGACAGATACAGCCACCCATCAAATTAGCGTTTGTC
AGATTTATGGTAATGGTTCACCAAAGCCTTCCTGTCATTGACATTAAGATTTACGCCTCC
AAAGTTATTTTGTCTTCCACAGAATATAGCTTGTGATTGCCCGGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               312-429, - strand, RNAz p=0.647217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-429, - strand, RNAz p=0.647217

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-825, gnl|bosTau2|chr20 (14262070-14261254)
               

               
               9-825, gnl|Hg17|chr5 (53547635-53546821)
               

               
               9-825, gnl|Mm7|chr13 (111051649-111052471)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-825, gnl|bosTau2|chr20 (14262070-14261254)
               

               
               9-825, gnl|Hg17|chr5 (53547635-53546821)
               

               
               9-825, gnl|Mm7|chr13 (111051649-111052471)

	9-825, gnl\|bosTau2\|chr20 (14262070-14261254)
	9-825, gnl\|Hg17\|chr5 (53547635-53546821)
	9-825, gnl\|Mm7\|chr13 (111051649-111052471)