Ss1.1-Pig3-SRG8015L02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGGGGGGGGGCAGGAGGCGCCCACATGGCAGCATGCTCATCGGCCTGAGGGGCTGCAG GGGCCCTGGGTCCGGGGAGCAGGTGTCATACACGGAAGACGGACTGATCTGTGGCGGCTG GTGGTGGCAGATCTGCAGACAGTGAGAGCACCCGCAGGGAGGCCTCCAGCTGCCGGGGCG GCAGGAAAAATTTGGGCACCACGATGGGCTCCGGGAGGAGGAGGCTGTGCCTCGTGGACG CCTCTGACCCAAAGGTCGCCTGCCTTTGCCTGATGTCGGGGCAGCTGCTGGCTGGCTCCT CATGGGTTTCCCTTCTGCTCTGGGAGGTTGGGCACAGAGGGAATTGCTCAAAGCTCTCGC CAGAGTCACTTATCTCATCAGAGGCAACTTCCTCCTCAGACTGGGCCTCTGGCGTGGGCT CCTGGGCCTGGTCTGCCTTCGGTGAGTTCCAGCCAACACAGCTCTCGCTCTGCTGGGCTC CTGAGAGGGTCACACGGGAGCTGAGCAGAGGGGCTGTTGAGACAGGCCCGCCGACCCCGG CCTCAGAGGCCTCACCCTCACGAGGAACAAGACTTTGGCCAGGAGAACCCCGCCCAGGCA AGGGGGGCTCGACAGCCCTTTCTGGGCCGGACAGAAAGTGGCTTATGACGTCGAGCTCCT CTCTGCGGAAAGGCTCTGAAGGACGAGAGTGGCCTTTCCTCTGCACTTCGTCAGGCTCAG GGCTGAGGATCCCACTCGCGTCTGACGTGAAACTGGACCAAGGGCTGGTTCTGTCTGTCA CGGTGGTGACCTCATTGAGGGTCCGGGGCTCAACGAGGTCTTCCTCATAGTCCTCGTCGC TGCAGGCCGGGCTTGCCCCAGGGTCCCCAGGGTCCTCGCCGCTCTGCATTCTCGTCATGG GCCCTGTGTGCCCCGGGGACCCAGGAGGCAGGCCTCTGCCACCTGAAGCCTGCGATGATG ACCCAAAGAGCATCTTTTCATCCGTCTTTGAAGAAGAGCCCATCGTCCTTGAAAAGCATG CCAATGGTTTTCTCTGTGATGCCACCCCTGTGCAGTCCGTGGACTGCAAACTCCAGGACA AAGATGAAAAAGCCCTGGTGCTGGCTGGCCCACATGAGCTGAAGGCTCTTCAAGTCCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGGGGGGGGGCAGGAGGCGCCCACATGGCAGCATGCTCATCGGCCTGAGGGGCTGCAG GGGCCCTGGGTCCGGGGAGCAGGTGTCATACACGGAAGACGGACTGATCTGTGGCGGCTG GTGGTGGCAGATCTGCAGACAGTGAGAGCACCCGCAGGGAGGCCTCCAGCTGCCGGGGCG GCAGGAAAAATTTGGGCACCACGATGGGCTCCGGGAGGAGGAGGCTGTGCCTCGTGGACG CCTCTGACCCAAAGGTCGCCTGCCTTTGCCTGATGTCGGGGCAGCTGCTGGCTGGCTCCT CATGGGTTTCCCTTCTGCTCTGGGAGGTTGGGCACAGAGGGAATTGCTCAAAGCTCTCGC CAGAGTCACTTATCTCATCAGAGGCAACTTCCTCCTCAGACTGGGCCTCTGGCGTGGGCT CCTGGGCCTGGTCTGCCTTCGGTGAGTTCCAGCCAACACAGCTCTCGCTCTGCTGGGCTC CTGAGAGGGTCACACGGGAGCTGAGCAGAGGGGCTGTTGAGACAGGCCCGCCGACCCCGG CCTCAGAGGCCTCACCCTCACGAGGAACAAGACTTTGGCCAGGAGAACCCCGCCCAGGCA AGGGGGGCTCGACAGCCCTTTCTGGGCCGGACAGAAAGTGGCTTATGACGTCGAGCTCCT CTCTGCGGAAAGGCTCTGAAGGACGAGAGTGGCCTTTCCTCTGCACTTCGTCAGGCTCAG GGCTGAGGATCCCACTCGCGTCTGACGTGAAACTGGACCAAGGGCTGGTTCTGTCTGTCA CGGTGGTGACCTCATTGAGGGTCCGGGGCTCAACGAGGTCTTCCTCATAGTCCTCGTCGC TGCAGGCCGGGCTTGCCCCAGGGTCCCCAGGGTCCTCGCCGCTCTGCATTCTCGTCATGG GCCCTGTGTGCCCCGGGGACCCAGGAGGCAGGCCTCTGCCACCTGAAGCCTGCGATGATG ACCCAAAGAGCATCTTTTCATCCGTCTTTGAAGAAGAGCCCATCGTCCTTGAAAAGCATG CCAATGGTTTTCTCTGTGATGCCACCCCTGTGCAGTCCGTGGACTGCAAACTCCAGGACA AAGATGAAAAAGCCCTGGTGCTGGCTGGCCCACATGAGCTGAAGGCTCTTCAAGTCCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 121-215, + strand, RNAz p=0.686434 | |
| 455-571, - strand, RNAz p=0.896586 | |
| 612-728, + strand, RNAz p=0.896559 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-215, + strand, RNAz p=0.686434 | |
| 455-571, - strand, RNAz p=0.896586 | |
| 612-728, + strand, RNAz p=0.896559 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 104-215, gnl|bosTau2|chr15 (33977834-33977945) | |
| 104-215, gnl|canFam2|chr21 (27260232-27259947) | |
| 104-215, gnl|dasNov1|scaffold_12860 (86880-86577) | |
| 104-215, gnl|echTel1|scaffold_315570 (60622-60326) | |
| 104-215, gnl|hg17|chr11 (73416826-73417119) | |
| 104-215, gnl|Hg17|chr11 (73416980-73417091) | |
| 104-215, gnl|loxAfr1|scaffold_78184 (1654-1959) | |
| 104-215, gnl|mm7|chr7 (96506274-96505993) | |
| 104-215, gnl|Mm7|chr7 (96506129-96506018) | |
| 104-215, gnl|monDom2|scaffold_74 (3408935-3408646) | |
| 104-215, gnl|oryCun1|scaffold_198246 (14484-14204) | |
| 104-215, gnl|panTro1|chr9 (74700137-74700430) | |
| 104-215, gnl|rheMac2|chr14 (72209566-72209859) | |
| 104-215, gnl|rn3|chr1 (157961303-157961044) | |
| 219-951, gnl|bosTau2|chr15 (33984078-33984801) | |
| 219-951, gnl|Hg17|chr11 (73422044-73422776) | |
| 219-951, gnl|Mm7|chr7 (96501732-96501037) | |
| 995-1137, gnl|bosTau2|chr11 (31563117-31562978) | |
| 995-1137, gnl|canFam2|chr17 (40133233-40133523) | |
| 995-1137, gnl|dasNov1|scaffold_48692 (3195-2975) | |
| 995-1137, gnl|echTel1|scaffold_276963 (83352-83063) | |
| 995-1137, gnl|hg17|chr2 (113306440-113306740) | |
| 995-1137, gnl|Hg17|chr2 (113306636-113306494) | |
| 995-1137, gnl|loxAfr1|scaffold_13775 (64523-64242) | |
| 995-1137, gnl|mm7|chr2 (129108063-129108371) | |
| 995-1137, gnl|Mm7|chr2 (129108265-129108117) | |
| 995-1137, gnl|monDom2|scaffold_63 (6282416-6282126) | |
| 995-1137, gnl|panTro1|chr12 (116446037-116446337) | |
| 995-1137, gnl|rheMac2|chr13 (112197950-112198249) | |
| 995-1137, gnl|rn3|chr3 (116872650-116872934) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-215, gnl|bosTau2|chr15 (33977834-33977945) | |
| 104-215, gnl|canFam2|chr21 (27260232-27259947) | |
| 104-215, gnl|dasNov1|scaffold_12860 (86880-86577) | |
| 104-215, gnl|echTel1|scaffold_315570 (60622-60326) | |
| 104-215, gnl|hg17|chr11 (73416826-73417119) | |
| 104-215, gnl|Hg17|chr11 (73416980-73417091) | |
| 104-215, gnl|loxAfr1|scaffold_78184 (1654-1959) | |
| 104-215, gnl|mm7|chr7 (96506274-96505993) | |
| 104-215, gnl|Mm7|chr7 (96506129-96506018) | |
| 104-215, gnl|monDom2|scaffold_74 (3408935-3408646) | |
| 104-215, gnl|oryCun1|scaffold_198246 (14484-14204) | |
| 104-215, gnl|panTro1|chr9 (74700137-74700430) | |
| 104-215, gnl|rheMac2|chr14 (72209566-72209859) | |
| 104-215, gnl|rn3|chr1 (157961303-157961044) | |
| 219-951, gnl|bosTau2|chr15 (33984078-33984801) | |
| 219-951, gnl|Hg17|chr11 (73422044-73422776) | |
| 219-951, gnl|Mm7|chr7 (96501732-96501037) | |
| 995-1137, gnl|bosTau2|chr11 (31563117-31562978) | |
| 995-1137, gnl|canFam2|chr17 (40133233-40133523) | |
| 995-1137, gnl|dasNov1|scaffold_48692 (3195-2975) | |
| 995-1137, gnl|echTel1|scaffold_276963 (83352-83063) | |
| 995-1137, gnl|hg17|chr2 (113306440-113306740) | |
| 995-1137, gnl|Hg17|chr2 (113306636-113306494) | |
| 995-1137, gnl|loxAfr1|scaffold_13775 (64523-64242) | |
| 995-1137, gnl|mm7|chr2 (129108063-129108371) | |
| 995-1137, gnl|Mm7|chr2 (129108265-129108117) | |
| 995-1137, gnl|monDom2|scaffold_63 (6282416-6282126) | |
| 995-1137, gnl|panTro1|chr12 (116446037-116446337) | |
| 995-1137, gnl|rheMac2|chr13 (112197950-112198249) | |
| 995-1137, gnl|rn3|chr3 (116872650-116872934) |