Non-Coding RNA Search

Ss1.1-Pig3-SRG8015L12.5

Sequence:


               
               CGCTTGTCAAGTCAGGAACGCTTCCTTATGCCTCCTCAGCAAATACAGGGGTCTGGAGTT
CCTCCCCAGCTGAGAAGGTCAATGTCTGTCGATATGACTAGGCCTCTAAATAACTCACAG
ATGAATAACCCAGTTGGACTTCCTCAGCATTTTCCACCACAGAGCCTGCCAGTTCAGCAG
CGGGGCATACTGGGCCAAGCATTTATCGAGTTGAGGCACAGGGCCCCCGATGGAAGGCCA
CGGATGCCCTTCACCGCCTCTCCAGGCAACATGATAGAGGCACCTTCCCATCCGAGACAT
GGGAGCTTCGTTCCCCGACCAGACTTCCCAGGCCCAAGACACACAGACCCAATGAGACGG
CCTTCCCAAGCTCTCCCTCATCAGCTGCCTGTGCATCCCAATTTGGAACAAGTGCCACCA
GCTCCGCAAGAGCAAAGCCATCCCGTCCACTCGTCTTCTGTGCTCATGAGGTCTCTGAGT
CATCCCTTGGGAGGTGAATTTCCGGAGGCCCCTCTGTCAGCGTCTGCACCAGCTGAAGCG
GCGCCTGATAATTTGCAGATAACCGCCCAGTCTTCCGACGGTCTCGAGGAAAAGCTGGAC
TCTGATGACCCCTCAGTTAAAGAACTGGATGTTAAAGACCTCGAGGGGGTTGAAGTCAAA
GACTTGGATGATGAAGACCTTGAAAATTTAAATCTAGATACAGAGGATGGCAAGGGCGAT
GAATTAGATACCTTAGGTAATTTGGAAACTAACGATCTTAACCTGGACGACCTCTTAAAG
TATGGAGAATTTGACATCATTGCGTACACAGATCCGGAACTGGACTTGGGAGATAAGAAA
AGCATGTTTAACGAGGAACTCGACCTCAGTGTTCCAATCGATGATAAGTTAGATAGTCAG
TGTGTTCTCTTGAACCCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTGTCAAGTCAGGAACGCTTCCTTATGCCTCCTCAGCAAATACAGGGGTCTGGAGTT
CCTCCCCAGCTGAGAAGGTCAATGTCTGTCGATATGACTAGGCCTCTAAATAACTCACAG
ATGAATAACCCAGTTGGACTTCCTCAGCATTTTCCACCACAGAGCCTGCCAGTTCAGCAG
CGGGGCATACTGGGCCAAGCATTTATCGAGTTGAGGCACAGGGCCCCCGATGGAAGGCCA
CGGATGCCCTTCACCGCCTCTCCAGGCAACATGATAGAGGCACCTTCCCATCCGAGACAT
GGGAGCTTCGTTCCCCGACCAGACTTCCCAGGCCCAAGACACACAGACCCAATGAGACGG
CCTTCCCAAGCTCTCCCTCATCAGCTGCCTGTGCATCCCAATTTGGAACAAGTGCCACCA
GCTCCGCAAGAGCAAAGCCATCCCGTCCACTCGTCTTCTGTGCTCATGAGGTCTCTGAGT
CATCCCTTGGGAGGTGAATTTCCGGAGGCCCCTCTGTCAGCGTCTGCACCAGCTGAAGCG
GCGCCTGATAATTTGCAGATAACCGCCCAGTCTTCCGACGGTCTCGAGGAAAAGCTGGAC
TCTGATGACCCCTCAGTTAAAGAACTGGATGTTAAAGACCTCGAGGGGGTTGAAGTCAAA
GACTTGGATGATGAAGACCTTGAAAATTTAAATCTAGATACAGAGGATGGCAAGGGCGAT
GAATTAGATACCTTAGGTAATTTGGAAACTAACGATCTTAACCTGGACGACCTCTTAAAG
TATGGAGAATTTGACATCATTGCGTACACAGATCCGGAACTGGACTTGGGAGATAAGAAA
AGCATGTTTAACGAGGAACTCGACCTCAGTGTTCCAATCGATGATAAGTTAGATAGTCAG
TGTGTTCTCTTGAACCCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-401, - strand, RNAz p=0.864533

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-401, - strand, RNAz p=0.864533

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-916, gnl|bosTau2|chr4 (64744652-64745566)
               

               
               3-916, gnl|Hg17|chr7 (151312713-151311805)
               

               
               3-916, gnl|Mm7|chr5 (24351882-24350971)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-916, gnl|bosTau2|chr4 (64744652-64745566)
               

               
               3-916, gnl|Hg17|chr7 (151312713-151311805)
               

               
               3-916, gnl|Mm7|chr5 (24351882-24350971)

	3-916, gnl\|bosTau2\|chr4 (64744652-64745566)
	3-916, gnl\|Hg17\|chr7 (151312713-151311805)
	3-916, gnl\|Mm7\|chr5 (24351882-24350971)