Non-Coding RNA Search

Ss1.1-Pig3-SRG8015M23.5

Sequence:


               
               GGGGAGCATCCTGGGCTGGGCTCAGATCTCACTCCGTTTCTGCCAAAGCCTCTATTGCAT
GAGGCAGAAGCTTTGTCTAGCCTGGCCTCAGAGGAAAGCTTGGCCCTGGAGGTGGAGCAG
CAGCTGGGCCTGGAGATCCAGAAGCTGACTGCACAGATCCAGCTCCTGCCTGAAGAGTCA
CTAAGTCTCTTTTTTCAAGAATGTCGTAAACAAGCCTCACAGGATTTTGAACTCCACATG
CCACGGGGTCGGTACTGGCGGCATCGTCTCTGTCCTGAACTTCCCAGCATTCCTAGTGAG
TATGCTGGGTTGGTGGTCCGCATAGTACTGGAGCCGGTGCTGCAAGGATTGCAAGGACTG
CCACCTCAAGCCCAGGCCCCCGCCCTCAGCCAGGCGCTGACTGCCATCCTGGGTGCCTGG
CTTGACCACATCCTCACCCATGAGATCCGGTTCATCCTGCAGGGGGCACTGCAGCTCATA
CAAGACTTTGGAGTTGTCCGGGCGTTGCTGGAGGATGAGCAGTGGGGCCTGTCCCCAGAA
CTTCGCCAGACTCTGCTCATGCTCAGCATCTTCCAGCAGCTGGATGGAGCCCTGCTGTGT
CTGTTGCAGCAGCCTCTGCCCAAGACTCAAATCCACAGGAGGCCTCTGTGTTGCTGTGAG
TTGATCTCCATGACCCAACTCCAGGATCCCTTGCCCCTAGCTCATTACTTTATGTGCCCC
AATCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGCATCCTGGGCTGGGCTCAGATCTCACTCCGTTTCTGCCAAAGCCTCTATTGCAT
GAGGCAGAAGCTTTGTCTAGCCTGGCCTCAGAGGAAAGCTTGGCCCTGGAGGTGGAGCAG
CAGCTGGGCCTGGAGATCCAGAAGCTGACTGCACAGATCCAGCTCCTGCCTGAAGAGTCA
CTAAGTCTCTTTTTTCAAGAATGTCGTAAACAAGCCTCACAGGATTTTGAACTCCACATG
CCACGGGGTCGGTACTGGCGGCATCGTCTCTGTCCTGAACTTCCCAGCATTCCTAGTGAG
TATGCTGGGTTGGTGGTCCGCATAGTACTGGAGCCGGTGCTGCAAGGATTGCAAGGACTG
CCACCTCAAGCCCAGGCCCCCGCCCTCAGCCAGGCGCTGACTGCCATCCTGGGTGCCTGG
CTTGACCACATCCTCACCCATGAGATCCGGTTCATCCTGCAGGGGGCACTGCAGCTCATA
CAAGACTTTGGAGTTGTCCGGGCGTTGCTGGAGGATGAGCAGTGGGGCCTGTCCCCAGAA
CTTCGCCAGACTCTGCTCATGCTCAGCATCTTCCAGCAGCTGGATGGAGCCCTGCTGTGT
CTGTTGCAGCAGCCTCTGCCCAAGACTCAAATCCACAGGAGGCCTCTGTGTTGCTGTGAG
TTGATCTCCATGACCCAACTCCAGGATCCCTTGCCCCTAGCTCATTACTTTATGTGCCCC
AATCCCCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96KA7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96KA7_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               12-162, - strand, RNAz p=0.995071
               

               
               32-162, + strand, RNAz p=0.972093
               

               
               570-689, - strand, RNAz p=0.562971

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-162, - strand, RNAz p=0.995071
               

               
               32-162, + strand, RNAz p=0.972093
               

               
               570-689, - strand, RNAz p=0.562971

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-162, gnl|bosTau2|chr11 (7804089-7804250)
               

               
               1-162, gnl|canFam2|chr17 (51726867-51726567)
               

               
               1-162, gnl|dasNov1|scaffold_83027 (6344-6638)
               

               
               1-162, gnl|hg17|chr2 (74619391-74619696)
               

               
               1-162, gnl|Hg17|chr2 (74619715-74619551)
               

               
               1-162, gnl|loxAfr1|scaffold_37592 (38799-39090)
               

               
               1-162, gnl|mm7|chr6 (83129279-83129016)
               

               
               1-162, gnl|Mm7|chr6 (83128987-83129159)
               

               
               1-162, gnl|monDom2|scaffold_10 (48192466-48192174)
               

               
               1-162, gnl|oryCun1|scaffold_200457 (30269-29983)
               

               
               1-162, gnl|panTro1|chr12 (77022495-77022802)
               

               
               1-162, gnl|rheMac2|chr13 (74711168-74711477)
               

               
               1-162, gnl|rn3|chr4 (117561197-117560936)
               


               
               451-707, gnl|bosTau2|chr11 (7807736-7807991)
               

               
               451-707, gnl|Hg17|chr2 (74613902-74613658)
               

               
               451-707, gnl|Mm7|chr6 (83133184-83133443)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-162, gnl|bosTau2|chr11 (7804089-7804250)
               

               
               1-162, gnl|canFam2|chr17 (51726867-51726567)
               

               
               1-162, gnl|dasNov1|scaffold_83027 (6344-6638)
               

               
               1-162, gnl|hg17|chr2 (74619391-74619696)
               

               
               1-162, gnl|Hg17|chr2 (74619715-74619551)
               

               
               1-162, gnl|loxAfr1|scaffold_37592 (38799-39090)
               

               
               1-162, gnl|mm7|chr6 (83129279-83129016)
               

               
               1-162, gnl|Mm7|chr6 (83128987-83129159)
               

               
               1-162, gnl|monDom2|scaffold_10 (48192466-48192174)
               

               
               1-162, gnl|oryCun1|scaffold_200457 (30269-29983)
               

               
               1-162, gnl|panTro1|chr12 (77022495-77022802)
               

               
               1-162, gnl|rheMac2|chr13 (74711168-74711477)
               

               
               1-162, gnl|rn3|chr4 (117561197-117560936)
               


               
               451-707, gnl|bosTau2|chr11 (7807736-7807991)
               

               
               451-707, gnl|Hg17|chr2 (74613902-74613658)
               

               
               451-707, gnl|Mm7|chr6 (83133184-83133443)

	12-162, - strand, RNAz p=0.995071
	32-162, + strand, RNAz p=0.972093
	570-689, - strand, RNAz p=0.562971

	1-162, gnl\|bosTau2\|chr11 (7804089-7804250)
	1-162, gnl\|canFam2\|chr17 (51726867-51726567)
	1-162, gnl\|dasNov1\|scaffold_83027 (6344-6638)
	1-162, gnl\|hg17\|chr2 (74619391-74619696)
	1-162, gnl\|Hg17\|chr2 (74619715-74619551)
	1-162, gnl\|loxAfr1\|scaffold_37592 (38799-39090)
	1-162, gnl\|mm7\|chr6 (83129279-83129016)
	1-162, gnl\|Mm7\|chr6 (83128987-83129159)
	1-162, gnl\|monDom2\|scaffold_10 (48192466-48192174)
	1-162, gnl\|oryCun1\|scaffold_200457 (30269-29983)
	1-162, gnl\|panTro1\|chr12 (77022495-77022802)
	1-162, gnl\|rheMac2\|chr13 (74711168-74711477)
	1-162, gnl\|rn3\|chr4 (117561197-117560936)

	451-707, gnl\|bosTau2\|chr11 (7807736-7807991)
	451-707, gnl\|Hg17\|chr2 (74613902-74613658)
	451-707, gnl\|Mm7\|chr6 (83133184-83133443)