Non-Coding RNA Search

Ss1.1-Pig3-SRG8015P16.3

Sequence:


               
               CGGCTCGAGCGCTGAACCACAATGGGAACTCCTTAGATGGGTTTTTTAAAGATGTGTTTC
TACTTCCATGAATATTGTGAAGTCCACTTTATAGAGGCTGATATAATGATGTGGGATACC
AGGGTTTTATTTTTTGAAGTTTCCTAGAGAAAATATAATCTCAAATACCCTTACACTCAA
GTTGTTCCAAAGACCAGTCCTCAGGGAAAGGAGTGGAGAAGCAGGAAGCTGGGAACCTCC
TCTTAGTTGGGATGAACTTCCTCTTGGTGGTGCCAGTCCTGGAAGGGTGTCCAGTGCGAG
CACGTGTTGTTCAAGCTTATCCTACTTTTTGACAGTTTAAGTTATTTAGAATTGATTCTT
TATGTTCTTTGGGAAATAATGCCAATCCTTGGAGCTTTCTTATCCTACTTATCAGAATAA
CAATAAACTCTTGGCCTGGGGGAGGCCAGACCAAGAGTTACTGTCATGATGAAACATCAA
AATTAAACCAAGCACATTTTAGCGCTTTTATGTGGCTTAATGCTGATTTTGTAAGATATT
ATTTTAAACATAAAGAATGTTTACCTATCCCCCCCATAATTTAGTTAACACAACACATGG
CACAGTCACCAAACAAACCGTGTCTCTTAAGATCGATGAACAAGTGCTCCCAGGGTCTCC
TTGCTCTGACCTTGGCATTAGAGGTCTCAACCACAGAACGGAACTTTTGACTGTCATTCA
ATTAAACAATCATTTAATTTAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCGAGCGCTGAACCACAATGGGAACTCCTTAGATGGGTTTTTTAAAGATGTGTTTC
TACTTCCATGAATATTGTGAAGTCCACTTTATAGAGGCTGATATAATGATGTGGGATACC
AGGGTTTTATTTTTTGAAGTTTCCTAGAGAAAATATAATCTCAAATACCCTTACACTCAA
GTTGTTCCAAAGACCAGTCCTCAGGGAAAGGAGTGGAGAAGCAGGAAGCTGGGAACCTCC
TCTTAGTTGGGATGAACTTCCTCTTGGTGGTGCCAGTCCTGGAAGGGTGTCCAGTGCGAG
CACGTGTTGTTCAAGCTTATCCTACTTTTTGACAGTTTAAGTTATTTAGAATTGATTCTT
TATGTTCTTTGGGAAATAATGCCAATCCTTGGAGCTTTCTTATCCTACTTATCAGAATAA
CAATAAACTCTTGGCCTGGGGGAGGCCAGACCAAGAGTTACTGTCATGATGAAACATCAA
AATTAAACCAAGCACATTTTAGCGCTTTTATGTGGCTTAATGCTGATTTTGTAAGATATT
ATTTTAAACATAAAGAATGTTTACCTATCCCCCCCATAATTTAGTTAACACAACACATGG
CACAGTCACCAAACAAACCGTGTCTCTTAAGATCGATGAACAAGTGCTCCCAGGGTCTCC
TTGCTCTGACCTTGGCATTAGAGGTCTCAACCACAGAACGGAACTTTTGACTGTCATTCA
ATTAAACAATCATTTAATTTAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-536, - strand, RNAz p=0.999644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-536, - strand, RNAz p=0.999644

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               468-548, - strand, RNAmicro p=0.918684

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               468-548, - strand, RNAmicro p=0.918684

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               34-666, gnl|bosTau2|chr6 (63732204-63731589)
               

               
               34-666, gnl|Hg17|chr4 (555680-554627)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-666, gnl|bosTau2|chr6 (63732204-63731589)
               

               
               34-666, gnl|Hg17|chr4 (555680-554627)

	34-666, gnl\|bosTau2\|chr6 (63732204-63731589)
	34-666, gnl\|Hg17\|chr4 (555680-554627)