Non-Coding RNA Search

Ss1.1-Pig3-SRG8016C12.5

Sequence:


               
               GTTCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTCGGAATTTATTACGGCAGGTG
CATGACCAAGCACAGAGGATGACAACTCATTTCCGAGGCCAACAGAGGCACCACTCAACC
TCCCATAGGCCTGAGGGCAGCACAGCATCCAGCTTGAAATGACCCTGCCTAGAAAGCCTG
AGATGCCAGCACCAGGGCTCAAACTTCAAACACACACTCGAAGAGATGTACGTCTTCTTA
TCGTCCAGGGAGGGCTTGCTGTCCTTCACCACCGCAAGCAGTATCTCCCATCAAGGCCTT
ATCCAAGATCGTATCTGAGCTTAAGTCCATATGTACAAAGGGCTCCCGCCAGGGGACAGT
ACACAAAACCTGCTGAAAGGAAATGCTGGCCACACTGCATATAAGAGGAACAAGGCAGGA
AAGGAATTCATAGAGTATCTTCTTAAAACAGATGGGCTTTATCTCCAAGAACAGACACAA
CACACTTCATTTTTGACAGAGCGCCTCAGAGAGTATTAGTCCCAGGAAACTGGAAGAAGG
CACTCAATTGTCGAGCACGTGGAGAGTTGTAATTATCATCATCTTTTTTTTTTTTTTTTT
TGCTTGACACGGATTTGAGCAGTGGGTTTTATGGCCAGAGAGGGACAGATGTTTTCAGGG
ATCCTATCTCAGATTCCCATGCTAGCCCTATTGTGTAAGCCATGGAAATATAAAGGGGAC
ATTACACCATTTTGCAGCTGCTAGAAAGCCATGCTTTCCTGTTTTCCTGTTTTAGACAAT
GGAGAAGCTAAGAAGAAGAATAATAGGAAAAGGCTTTCCTATATTTGCCTTCAAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTCGGAATTTATTACGGCAGGTG
CATGACCAAGCACAGAGGATGACAACTCATTTCCGAGGCCAACAGAGGCACCACTCAACC
TCCCATAGGCCTGAGGGCAGCACAGCATCCAGCTTGAAATGACCCTGCCTAGAAAGCCTG
AGATGCCAGCACCAGGGCTCAAACTTCAAACACACACTCGAAGAGATGTACGTCTTCTTA
TCGTCCAGGGAGGGCTTGCTGTCCTTCACCACCGCAAGCAGTATCTCCCATCAAGGCCTT
ATCCAAGATCGTATCTGAGCTTAAGTCCATATGTACAAAGGGCTCCCGCCAGGGGACAGT
ACACAAAACCTGCTGAAAGGAAATGCTGGCCACACTGCATATAAGAGGAACAAGGCAGGA
AAGGAATTCATAGAGTATCTTCTTAAAACAGATGGGCTTTATCTCCAAGAACAGACACAA
CACACTTCATTTTTGACAGAGCGCCTCAGAGAGTATTAGTCCCAGGAAACTGGAAGAAGG
CACTCAATTGTCGAGCACGTGGAGAGTTGTAATTATCATCATCTTTTTTTTTTTTTTTTT
TGCTTGACACGGATTTGAGCAGTGGGTTTTATGGCCAGAGAGGGACAGATGTTTTCAGGG
ATCCTATCTCAGATTCCCATGCTAGCCCTATTGTGTAAGCCATGGAAATATAAAGGGGAC
ATTACACCATTTTGCAGCTGCTAGAAAGCCATGCTTTCCTGTTTTCCTGTTTTAGACAAT
GGAGAAGCTAAGAAGAAGAATAATAGGAAAAGGCTTTCCTATATTTGCCTTCAAAAAAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               702-839, + strand, RNAz p=0.857184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               702-839, + strand, RNAz p=0.857184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               155-839, gnl|bosTau2|chr13 (27485013-27485730)
               

               
               155-839, gnl|Hg17|chr20 (23008162-23008865)
               

               
               155-839, gnl|Mm7|chr2 (148177676-148178362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-839, gnl|bosTau2|chr13 (27485013-27485730)
               

               
               155-839, gnl|Hg17|chr20 (23008162-23008865)
               

               
               155-839, gnl|Mm7|chr2 (148177676-148178362)

	155-839, gnl\|bosTau2\|chr13 (27485013-27485730)
	155-839, gnl\|Hg17\|chr20 (23008162-23008865)
	155-839, gnl\|Mm7\|chr2 (148177676-148178362)