Ss1.1-Pig3-SRG8016D01.3
|
CGGCTCGAGGTGAGCCACCCCCTCCAGTCTTGGTGGTGGAGATACCGCTGTTTTCTCCAT
CTGGCTCCCAAGGCTGCTAAGCGAAGGTAGAGCTACCTTTTTAAACCAAGATCTTAACCA
GATTTTTTACTGCTTGGTTTGATGGGCCCCAGTCATCTCCTAGATTTCAAAAACATTTTT
GTAATTGGGAGTAATGACTGGCAAGTTCACCAAGACATTCTAGAAACTTCTGAGCCGGGA
GCGTATGACCCTTCCTCAGAGCCTGGGGGACATCAGGGGAGTATGCAGCCTCTACCCTTT
GCCCCTGGAGAGAAGGGGCTCCCCATCCCAGGCGGGGGACTTCCTGTCTCTTGCTCTTCC
CAGCTTCGTGAGTCAGGCCAAGGGTGGGCGGGAGTGGAAGGCTCCTGCCTGCCCAGATAT
AAGCCAGTCTCACTGTGAACCACTACCAACCTTAACTGGGGGAGTGAGGGGCTGGCCAGG
CCTGGCGAAGCCTCGGGGTGTCCCCAGCCCAGCACCCAGCTTGAGCCCCTCCCCCTGCAT
TGCCCCTCCCCTCCCCCCACCCCGGCTGGCGGCCCCTTCCCAACGATGACAGTCACCTCG
ACGCCCTTCGGATGTTTGGGAGACGCATTCTCTTCCCTGTCTGATGGACAGGATGCTGGC
AAAGCCTAGGTCTGGCTTTGTGGGGGGAGGGGGGTGTTGCAAGATGTTGGGAGAACCGGT
CAATAAAGTATACTACCTCTGACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGCTCGAGGTGAGCCACCCCCTCCAGTCTTGGTGGTGGAGATACCGCTGTTTTCTCCAT
CTGGCTCCCAAGGCTGCTAAGCGAAGGTAGAGCTACCTTTTTAAACCAAGATCTTAACCA
GATTTTTTACTGCTTGGTTTGATGGGCCCCAGTCATCTCCTAGATTTCAAAAACATTTTT
GTAATTGGGAGTAATGACTGGCAAGTTCACCAAGACATTCTAGAAACTTCTGAGCCGGGA
GCGTATGACCCTTCCTCAGAGCCTGGGGGACATCAGGGGAGTATGCAGCCTCTACCCTTT
GCCCCTGGAGAGAAGGGGCTCCCCATCCCAGGCGGGGGACTTCCTGTCTCTTGCTCTTCC
CAGCTTCGTGAGTCAGGCCAAGGGTGGGCGGGAGTGGAAGGCTCCTGCCTGCCCAGATAT
AAGCCAGTCTCACTGTGAACCACTACCAACCTTAACTGGGGGAGTGAGGGGCTGGCCAGG
CCTGGCGAAGCCTCGGGGTGTCCCCAGCCCAGCACCCAGCTTGAGCCCCTCCCCCTGCAT
TGCCCCTCCCCTCCCCCCACCCCGGCTGGCGGCCCCTTCCCAACGATGACAGTCACCTCG
ACGCCCTTCGGATGTTTGGGAGACGCATTCTCTTCCCTGTCTGATGGACAGGATGCTGGC
AAAGCCTAGGTCTGGCTTTGTGGGGGGAGGGGGGTGTTGCAAGATGTTGGGAGAACCGGT
CAATAAAGTATACTACCTCTGACC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
456-608, - strand, RNAmicro p=0.997986 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
456-608, - strand, RNAmicro p=0.997986 |
|
420-479, DB551908 RIKEN full-length enriched human cDNA library, hippocampus
(dbj|DB551908.1|), blast E-value=0.000000000002, identity=91.67% |
|
417-479, qw27h01.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AI369043.1|),
blast E-value=0.00000000000003, identity=92.06% |
|
420-479, CH3#050_G05T3 Canine heart normalized cDNA Library in pBluescript
(gb|CF407811.1|), blast E-value=0.00000000000003, identity=93.55% |
|
420-479, iv31h10.b1 Left Cardiac Ventricle (DOGEST7) Canis familiaris cDNA,
(gb|CX002456.1|), blast E-value=0.00000000000003, identity=93.55% |
|
420-479, iv31h10.g1 Left Cardiac Ventricle (DOGEST7) Canis familiaris cDNA,
(gb|CX002457.1|), blast E-value=0.00000000000003, identity=93.55% |
|
420-479, GL-Cf-12358 GLGC-LIB0001-cf Canis familiaris Normalized Mixed
(gb|DN755562.1|), blast E-value=0.00000000000003, identity=93.55% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
420-479, DB551908 RIKEN full-length enriched human cDNA library, hippocampus
(dbj|DB551908.1|), blast E-value=0.000000000002, identity=91.67% |
|
417-479, qw27h01.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AI369043.1|),
blast E-value=0.00000000000003, identity=92.06% |
|
420-479, CH3#050_G05T3 Canine heart normalized cDNA Library in pBluescript
(gb|CF407811.1|), blast E-value=0.00000000000003, identity=93.55% |
|
420-479, iv31h10.b1 Left Cardiac Ventricle (DOGEST7) Canis familiaris cDNA,
(gb|CX002456.1|), blast E-value=0.00000000000003, identity=93.55% |
|
420-479, iv31h10.g1 Left Cardiac Ventricle (DOGEST7) Canis familiaris cDNA,
(gb|CX002457.1|), blast E-value=0.00000000000003, identity=93.55% |
|
420-479, GL-Cf-12358 GLGC-LIB0001-cf Canis familiaris Normalized Mixed
(gb|DN755562.1|), blast E-value=0.00000000000003, identity=93.55% |
|
11-329, gnl|bosTau2|chr17 (27404144-27403822) |
|
11-329, gnl|Hg17|chr12 (121939137-121938854) |
|
11-329, gnl|Mm7|chr5 (123308402-123308114) |
| |
|
336-743, gnl|bosTau2|chr17 (27403793-27403393) |
|
336-743, gnl|canFam2|chr26 (9585580-9584964) |
|
336-743, gnl|dasNov1|scaffold_64348 (3067-2491) |
|
336-743, gnl|hg17|chr12 (121938339-121938935) |
|
336-743, gnl|Hg17|chr12 (121938834-121938425) |
|
336-743, gnl|loxAfr1|scaffold_4238 (83592-84171) |
|
336-743, gnl|mm7|chr5 (123307649-123308197) |
|
336-743, gnl|Mm7|chr5 (123308095-123307707) |
|
336-743, gnl|monDom2|scaffold_97 (3323552-3324222) |
|
336-743, gnl|oryCun1|scaffold_109919 (5352-4805) |
|
336-743, gnl|panTro1|chr10 (125016949-125017546) |
|
336-743, gnl|rheMac2|chr11 (124196010-124196606) |
|
336-743, gnl|rn3|chr12 (33519679-33519145) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-329, gnl|bosTau2|chr17 (27404144-27403822) |
|
11-329, gnl|Hg17|chr12 (121939137-121938854) |
|
11-329, gnl|Mm7|chr5 (123308402-123308114) |
| |
|
336-743, gnl|bosTau2|chr17 (27403793-27403393) |
|
336-743, gnl|canFam2|chr26 (9585580-9584964) |
|
336-743, gnl|dasNov1|scaffold_64348 (3067-2491) |
|
336-743, gnl|hg17|chr12 (121938339-121938935) |
|
336-743, gnl|Hg17|chr12 (121938834-121938425) |
|
336-743, gnl|loxAfr1|scaffold_4238 (83592-84171) |
|
336-743, gnl|mm7|chr5 (123307649-123308197) |
|
336-743, gnl|Mm7|chr5 (123308095-123307707) |
|
336-743, gnl|monDom2|scaffold_97 (3323552-3324222) |
|
336-743, gnl|oryCun1|scaffold_109919 (5352-4805) |
|
336-743, gnl|panTro1|chr10 (125016949-125017546) |
|
336-743, gnl|rheMac2|chr11 (124196010-124196606) |
|
336-743, gnl|rn3|chr12 (33519679-33519145) |
