Non-Coding RNA Search

Ss1.1-Pig3-SRG8016E06.3

Sequence:


               
               AAAGAAAAGAATGTACATGTGGTCATTGGAAAAAATTATGAAACTAACAGGCAAAAATGA
AGAAAGAAACACCGCGGATAGATAACTAACCCGTTTTGGGTCTTCCCCACATGCAGGGTC
CTATTCCAGGGGCTCTGAACATATTTCCTCGGAACGCATCACCCCCACTTTGCACATGAC
AAAACTGAGGCACATAGAGCCTATGTAAGTTGCCCAATGGATGAAACCAGAGCTTGAACT
AAGTGGTTTGGTTCCAGGGCCAACGTGCTTTATCCACTGCCCTGGTCTATCTGGAGCCTC
CCGTCCTTATGAGAACAGCCTCTCATGCAGGCCATCGGGCGGCATATGCCATATCCCATG
TCCCACGCATCCGACTCCTTGTCGCCTGTTCATTGCCTCACTTTCCACAGGCCCACATCT
TGACCAGAGGTACCGAGTGCTGCGTGCCAGGGTGAGGCTAGAAGCAGACACGGAGAAGGC
AAGAAAGACACACATGCAGTGTTGGTGCCTGTCCTTGGGCCCCGGGCACACAGGCGTCGC
CATTACAACCGCTGGGCTTAACTTGAATTCAGATTTGGAATTGGATCTTAAGAAGATTTC
TCAGAGCAGTGTTTTGCAAGGACTTGATTTTAGGTGGCACATAAATGAAACAGTTCCACA
CTTCAAGATGCGATGCATATGTGTGTGTAAACTGTGTTATATTGTGTGTGTGTGTGTCTG
TGTGTGTCATCACACAATATGTATTCTTTTTGTATGATTTCTTTCACCTTCACTCACTGT
GATTATTTTGAGATTCATCTGTGTTGTTGCATATATAATATTTCTTTGCTTTAATTGCTG
TTGTATTTCACTGTAGGTATATATCTATACAACTAGTGAAAAATGAAAACTAAGATATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAAAGAATGTACATGTGGTCATTGGAAAAAATTATGAAACTAACAGGCAAAAATGA
AGAAAGAAACACCGCGGATAGATAACTAACCCGTTTTGGGTCTTCCCCACATGCAGGGTC
CTATTCCAGGGGCTCTGAACATATTTCCTCGGAACGCATCACCCCCACTTTGCACATGAC
AAAACTGAGGCACATAGAGCCTATGTAAGTTGCCCAATGGATGAAACCAGAGCTTGAACT
AAGTGGTTTGGTTCCAGGGCCAACGTGCTTTATCCACTGCCCTGGTCTATCTGGAGCCTC
CCGTCCTTATGAGAACAGCCTCTCATGCAGGCCATCGGGCGGCATATGCCATATCCCATG
TCCCACGCATCCGACTCCTTGTCGCCTGTTCATTGCCTCACTTTCCACAGGCCCACATCT
TGACCAGAGGTACCGAGTGCTGCGTGCCAGGGTGAGGCTAGAAGCAGACACGGAGAAGGC
AAGAAAGACACACATGCAGTGTTGGTGCCTGTCCTTGGGCCCCGGGCACACAGGCGTCGC
CATTACAACCGCTGGGCTTAACTTGAATTCAGATTTGGAATTGGATCTTAAGAAGATTTC
TCAGAGCAGTGTTTTGCAAGGACTTGATTTTAGGTGGCACATAAATGAAACAGTTCCACA
CTTCAAGATGCGATGCATATGTGTGTGTAAACTGTGTTATATTGTGTGTGTGTGTGTCTG
TGTGTGTCATCACACAATATGTATTCTTTTTGTATGATTTCTTTCACCTTCACTCACTGT
GATTATTTTGAGATTCATCTGTGTTGTTGCATATATAATATTTCTTTGCTTTAATTGCTG
TTGTATTTCACTGTAGGTATATATCTATACAACTAGTGAAAAATGAAAACTAAGATATAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               207-314, - strand, RNAz p=0.814592
               

               
               702-795, + strand, RNAz p=0.775765

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-314, - strand, RNAz p=0.814592
               

               
               702-795, + strand, RNAz p=0.775765

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               46-440, gnl|bosTau2|chr18 (21452139-21452534)
               

               
               46-440, gnl|canFam2|chr2 (61812092-61811652)
               

               
               46-440, gnl|hg17|chr16 (56088967-56089423)
               

               
               46-440, gnl|oryCun1|scaffold_149771 (11775-11336)
               

               
               46-440, gnl|panTro1|chr18 (50197927-50198387)
               

               
               46-440, gnl|rheMac2|chr20 (55847468-55847957)
               


               
               564-899, gnl|bosTau2|chr18 (21453841-21454176)
               

               
               564-899, gnl|Hg17|chr16 (56088036-56087666)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-440, gnl|bosTau2|chr18 (21452139-21452534)
               

               
               46-440, gnl|canFam2|chr2 (61812092-61811652)
               

               
               46-440, gnl|hg17|chr16 (56088967-56089423)
               

               
               46-440, gnl|oryCun1|scaffold_149771 (11775-11336)
               

               
               46-440, gnl|panTro1|chr18 (50197927-50198387)
               

               
               46-440, gnl|rheMac2|chr20 (55847468-55847957)
               


               
               564-899, gnl|bosTau2|chr18 (21453841-21454176)
               

               
               564-899, gnl|Hg17|chr16 (56088036-56087666)

	207-314, - strand, RNAz p=0.814592
	702-795, + strand, RNAz p=0.775765

	46-440, gnl\|bosTau2\|chr18 (21452139-21452534)
	46-440, gnl\|canFam2\|chr2 (61812092-61811652)
	46-440, gnl\|hg17\|chr16 (56088967-56089423)
	46-440, gnl\|oryCun1\|scaffold_149771 (11775-11336)
	46-440, gnl\|panTro1\|chr18 (50197927-50198387)
	46-440, gnl\|rheMac2\|chr20 (55847468-55847957)

	564-899, gnl\|bosTau2\|chr18 (21453841-21454176)
	564-899, gnl\|Hg17\|chr16 (56088036-56087666)