Non-Coding RNA Search

Ss1.1-Pig3-SRG8016E10.3

Sequence:


               
               GAAGGAACAGTAAAACATGACGTTCCAGATCAGTTACAAGCTGTTCCTGGACTGTGTCAG
GGCCAATCTTTTATCGTTTCAAATTTAGGAGTCCGCCACTAGAAAATAATCACTTACCAG
CTGATGCAGCAAATGCTCTCTCCTCTCACTCCCAGGCAATACAGTTTGGGGTCTTCTTGA
CTCAAATCGCAACCAAAGCCCCTTCCACACATTTTGGAGATGGCTGGGGATCGGGGGATT
AATTCCCTACCAGGAGAATGTGAATTGGGGCATGTTCGTGAGTTCATCAGTCTTTTAGTA
AAGATGCTCTGGCATAAACAAATCAATGAGGGCACAGGGAAGGGGAATTTAAAAATAAAA
AAACCCAACTCGGTCCCCATTCAGAACAGTGGGAAAATCCTCCCCAGGAGAGCCTGTGTG
CAGCCTGCAATTTTCACCCATCCAATTTCACGCCACAGTATCGGGTGTGAAGCAAACCCA
CCATCCCTCAATATCACTACGTGTATGAGCCTGAATCATGAGCCCCAAAGACATCAGGTC
CTAACACCTGGAACCAGTGACTGTGACCTTATATGCAAAAAGGGGTCTTTGTAGATGTGA
TTAAATTTAAAATCTTGAGATAGGGAGATTATCCTGGATCATCTATGGGCCCTAAATGCC
ATCACAAGTGTCCGGCAAAGGGCGATCAAACACAGAAGATAAGGACCTATGGCCACGGGG
GCAGGGACGGTGACACAGCCCTAGCCAAGGAATGTCAGCAGCCACCAGACACTGATTTTC
CCCTAGAGCTCCCAGCACATACAGAGTCCTGCCGACACCATGACTAGGACCCGATGGAAC
TGATTTTGGAATTCTGGCCTCCAAAGCTAAGGACATAAATTGCTGTTGTTTGAAGCCCCT
ATGAGGCACTTTGTCTGTGGCACTTTGTTAGAGCAACCATAGCACACTAGTATAACTAGG
CAAATAAAAGGCAGATCAGAGAGAGTTAAGAATTTAGCACTGTAAAGAATTTAATGCAAT
CCTCCCTGTGTTTCTGTTTGATACATCAGAGAGGAGGCCAAGGGCCGTGACAAATCCACC
CACAGTGGGAGGCAGAGCTGAAACCAGGTCTTATGAGTCGCGCAGTTCTTTCTAAGGAAG
GGAGGTCCAGCCTTTGGCCTGTGCGGGTACCCTCCTAACTTTCTCAGACTGTTTCCAGGG
CTCTACAATACTCTCCCCTCTGGC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATATCATATGCTGTGGTGGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAACAGTAAAACATGACGTTCCAGATCAGTTACAAGCTGTTCCTGGACTGTGTCAG
GGCCAATCTTTTATCGTTTCAAATTTAGGAGTCCGCCACTAGAAAATAATCACTTACCAG
CTGATGCAGCAAATGCTCTCTCCTCTCACTCCCAGGCAATACAGTTTGGGGTCTTCTTGA
CTCAAATCGCAACCAAAGCCCCTTCCACACATTTTGGAGATGGCTGGGGATCGGGGGATT
AATTCCCTACCAGGAGAATGTGAATTGGGGCATGTTCGTGAGTTCATCAGTCTTTTAGTA
AAGATGCTCTGGCATAAACAAATCAATGAGGGCACAGGGAAGGGGAATTTAAAAATAAAA
AAACCCAACTCGGTCCCCATTCAGAACAGTGGGAAAATCCTCCCCAGGAGAGCCTGTGTG
CAGCCTGCAATTTTCACCCATCCAATTTCACGCCACAGTATCGGGTGTGAAGCAAACCCA
CCATCCCTCAATATCACTACGTGTATGAGCCTGAATCATGAGCCCCAAAGACATCAGGTC
CTAACACCTGGAACCAGTGACTGTGACCTTATATGCAAAAAGGGGTCTTTGTAGATGTGA
TTAAATTTAAAATCTTGAGATAGGGAGATTATCCTGGATCATCTATGGGCCCTAAATGCC
ATCACAAGTGTCCGGCAAAGGGCGATCAAACACAGAAGATAAGGACCTATGGCCACGGGG
GCAGGGACGGTGACACAGCCCTAGCCAAGGAATGTCAGCAGCCACCAGACACTGATTTTC
CCCTAGAGCTCCCAGCACATACAGAGTCCTGCCGACACCATGACTAGGACCCGATGGAAC
TGATTTTGGAATTCTGGCCTCCAAAGCTAAGGACATAAATTGCTGTTGTTTGAAGCCCCT
ATGAGGCACTTTGTCTGTGGCACTTTGTTAGAGCAACCATAGCACACTAGTATAACTAGG
CAAATAAAAGGCAGATCAGAGAGAGTTAAGAATTTAGCACTGTAAAGAATTTAATGCAAT
CCTCCCTGTGTTTCTGTTTGATACATCAGAGAGGAGGCCAAGGGCCGTGACAAATCCACC
CACAGTGGGAGGCAGAGCTGAAACCAGGTCTTATGAGTCGCGCAGTTCTTTCTAAGGAAG
GGAGGTCCAGCCTTTGGCCTGTGCGGGTACCCTCCTAACTTTCTCAGACTGTTTCCAGGG
CTCTACAATACTCTCCCCTCTGGC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATATCATATGCTGTGGTGGCCAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               2-789, gnl|bosTau2|chr18 (7704026-7703274)
               

               
               2-789, gnl|Hg17|chr16 (79542612-79543732)
               


               
               801-1223, gnl|bosTau2|chr18 (7703243-7702825)
               

               
               801-1223, gnl|Hg17|chr16 (79543750-79544139)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-789, gnl|bosTau2|chr18 (7704026-7703274)
               

               
               2-789, gnl|Hg17|chr16 (79542612-79543732)
               


               
               801-1223, gnl|bosTau2|chr18 (7703243-7702825)
               

               
               801-1223, gnl|Hg17|chr16 (79543750-79544139)

	2-789, gnl\|bosTau2\|chr18 (7704026-7703274)
	2-789, gnl\|Hg17\|chr16 (79542612-79543732)

	801-1223, gnl\|bosTau2\|chr18 (7703243-7702825)
	801-1223, gnl\|Hg17\|chr16 (79543750-79544139)