Non-Coding RNA Search

Ss1.1-Pig3-SRG8016E11.5

Sequence:


               
               CTCGTAGGTTGCCTACCCCGCCAAGACCGAAGGCCAGCCAGGTCTGGGACTGTGGCGGCG
TTCATAGAGCCCCCTCCGGCTCACCCCTCCGGCGCTGGCTCCGCAGATCTTCAACTTGAT
GAAGTTCGACAGCTATGCGCGCTTCGTCAAATCCCCGATGTACCGCGAGTGCCTCCTAGC
GGAGGCCGAGGGTCGCCCCCTGCGGGAACCTGGATCCTCGCGCCTCGGCAGCCCTGAAGC
CACAAGGAAGGTGCGGACTGGGAGGTGTGGGGGCTAGCAGCCAGGTGTAGATCTGTGGGG
GTGTGTCCACGGTCGGCCTGAGGGATAGGGTCCGGCCTTTTGCCAATGCCTTCCCTCTAT
CTTGCAGAAACATAAGCTGAAGCCTGGGAAGTCGCTGCCGCTGGGTGTGGAGGAGTTGGG
GCAGCAGCCGCAGGATGAGGGCCCTGGGGGCCGCCCTCTCCGCAAGTCCTTCCGCAAGGG
TGAGGGCAGGAGCGGGCCCCCCCCATGAGTGGGAGCGGCGTCTGGAACAGCTTTGAGAAC
ACCTTCCTCTTACTGGTCCCGCAGTCTTAAAGTCTGTGAAAATGCAGGTCCCACAGAGCT
CCCTGGTGGCTCGGGTCACTGCTGTGGCTATGGGTTCGATCCCTGGCCCGGGAACTTCTG
CCTATGCCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGTAGGTTGCCTACCCCGCCAAGACCGAAGGCCAGCCAGGTCTGGGACTGTGGCGGCG
TTCATAGAGCCCCCTCCGGCTCACCCCTCCGGCGCTGGCTCCGCAGATCTTCAACTTGAT
GAAGTTCGACAGCTATGCGCGCTTCGTCAAATCCCCGATGTACCGCGAGTGCCTCCTAGC
GGAGGCCGAGGGTCGCCCCCTGCGGGAACCTGGATCCTCGCGCCTCGGCAGCCCTGAAGC
CACAAGGAAGGTGCGGACTGGGAGGTGTGGGGGCTAGCAGCCAGGTGTAGATCTGTGGGG
GTGTGTCCACGGTCGGCCTGAGGGATAGGGTCCGGCCTTTTGCCAATGCCTTCCCTCTAT
CTTGCAGAAACATAAGCTGAAGCCTGGGAAGTCGCTGCCGCTGGGTGTGGAGGAGTTGGG
GCAGCAGCCGCAGGATGAGGGCCCTGGGGGCCGCCCTCTCCGCAAGTCCTTCCGCAAGGG
TGAGGGCAGGAGCGGGCCCCCCCCATGAGTGGGAGCGGCGTCTGGAACAGCTTTGAGAAC
ACCTTCCTCTTACTGGTCCCGCAGTCTTAAAGTCTGTGAAAATGCAGGTCCCACAGAGCT
CCCTGGTGGCTCGGGTCACTGCTGTGGCTATGGGTTCGATCCCTGGCCCGGGAACTTCTG
CCTATGCCTCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|20147765|gb|AAM12650.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|20147765|gb|AAM12650.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               54-161, + strand, RNAz p=0.657901

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-161, + strand, RNAz p=0.657901

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               54-583, gnl|bosTau2|chr7 (21592329-21592848)
               

               
               54-583, gnl|Hg17|chr5 (176726981-176727541)
               

               
               54-583, gnl|Mm7|chr13 (54459866-54460422)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-583, gnl|bosTau2|chr7 (21592329-21592848)
               

               
               54-583, gnl|Hg17|chr5 (176726981-176727541)
               

               
               54-583, gnl|Mm7|chr13 (54459866-54460422)

	54-583, gnl\|bosTau2\|chr7 (21592329-21592848)
	54-583, gnl\|Hg17\|chr5 (176726981-176727541)
	54-583, gnl\|Mm7\|chr13 (54459866-54460422)