Non-Coding RNA Search

Ss1.1-Pig3-SRG8016F07.5

Sequence:


               
               TTTATCAGCATGGGGCTCGCCAAGAGATCCAGCAGCTTTGCTGGCCGAAGAGACTGCTGA
TTCACTTTAGTGCAAGGGGGAAACACCTATGGATATATCAGATGCTGTTGAAATATATTT
TTTAAAAAGTATCACTGCATATCAAACACCATTGGGCCCAGAGGATTATGAAACACTGAG
CACTATTGAAGAATTTTGCAAATGGCTTATCCAAAATGGGGAAAAACTGGAGGCTTACAG
ATTGCTAAAGGCTTCACTGAAGTCTCAAGTCATCCACTATGGGGACTATCGTGAAAAAGT
GGCTGAAACGTTTTATAACATGAGCAGCATCCGCTTTGCCAAAGGAGAGCTCAAAAAAGC
AATTCAGCTGCTAAGGAAGGTTAACTAAATATAATCAGAAAATAAGTACGAAAATATTAA
ATAACAGGAGAAAGAAAACTTTATTTTGAAGATTCAGAGAAAAATATTCCCACCAGCAGA
GTATGAGAACTACAGTTCCTCCACTTCACTGATATTTGGTATAGTTACTGCTTTTGATTT
TAGCCATCCTAATAGTGCCTGATGATTCGAATCCTTATATATGGAAATGAGCACAGTGAA
AGCCGAAATACAAAACTCTCCTTTCCCTAAGGCAGAGGTCTTCTGTTATTAGTAAAGAGA
AAACCTCTGTACAAGATAACCAACAATAAAGCCTCCCTTGTTGATAACAAAAATCCTGGA
CCACAAAATATATTTATCAACACTGATAGCAGTGGCAGATCAAAAACAGAACCAAGGACT
CTGGGGGAAAAAAGGTCCACTTAGCAGCAGCATTACAGGTAAAATACCCAAGAGCCCTAA
GAAACCAGGATCCTGTAACTTGGGGGGAAAAATCAGACGCATGCTTTGTTTCTCACTTCA
CTGGGATTCCCATTGTATCTTTCATTTCCCTTTTTCTAACTCTAATTTCATTCTTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATCAGCATGGGGCTCGCCAAGAGATCCAGCAGCTTTGCTGGCCGAAGAGACTGCTGA
TTCACTTTAGTGCAAGGGGGAAACACCTATGGATATATCAGATGCTGTTGAAATATATTT
TTTAAAAAGTATCACTGCATATCAAACACCATTGGGCCCAGAGGATTATGAAACACTGAG
CACTATTGAAGAATTTTGCAAATGGCTTATCCAAAATGGGGAAAAACTGGAGGCTTACAG
ATTGCTAAAGGCTTCACTGAAGTCTCAAGTCATCCACTATGGGGACTATCGTGAAAAAGT
GGCTGAAACGTTTTATAACATGAGCAGCATCCGCTTTGCCAAAGGAGAGCTCAAAAAAGC
AATTCAGCTGCTAAGGAAGGTTAACTAAATATAATCAGAAAATAAGTACGAAAATATTAA
ATAACAGGAGAAAGAAAACTTTATTTTGAAGATTCAGAGAAAAATATTCCCACCAGCAGA
GTATGAGAACTACAGTTCCTCCACTTCACTGATATTTGGTATAGTTACTGCTTTTGATTT
TAGCCATCCTAATAGTGCCTGATGATTCGAATCCTTATATATGGAAATGAGCACAGTGAA
AGCCGAAATACAAAACTCTCCTTTCCCTAAGGCAGAGGTCTTCTGTTATTAGTAAAGAGA
AAACCTCTGTACAAGATAACCAACAATAAAGCCTCCCTTGTTGATAACAAAAATCCTGGA
CCACAAAATATATTTATCAACACTGATAGCAGTGGCAGATCAAAAACAGAACCAAGGACT
CTGGGGGAAAAAAGGTCCACTTAGCAGCAGCATTACAGGTAAAATACCCAAGAGCCCTAA
GAAACCAGGATCCTGTAACTTGGGGGGAAAAATCAGACGCATGCTTTGTTTCTCACTTCA
CTGGGATTCCCATTGTATCTTTCATTTCCCTTTTTCTAACTCTAATTTCATTCTTTTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               255-374, + strand, RNAz p=0.614672

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-374, + strand, RNAz p=0.614672

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               229-384, gnl|bosTau2|chr19 (28095710-28095555)
               

               
               229-384, gnl|canFam2|chr4 (76610950-76610496)
               

               
               229-384, gnl|dasNov1|scaffold_165546 (1166-1625)
               

               
               229-384, gnl|echTel1|scaffold_317998 (10570-10137)
               

               
               229-384, gnl|hg17|chr5 (34922016-34922495)
               

               
               229-384, gnl|Hg17|chr5 (34922260-34922415)
               

               
               229-384, gnl|mm7|chr15 (10577098-10576638)
               

               
               229-384, gnl|Mm7|chr15 (10576882-10576719)
               

               
               229-384, gnl|oryCun1|scaffold_111459 (14523-14949)
               

               
               229-384, gnl|panTro1|chr4 (81910085-81909611)
               

               
               229-384, gnl|rheMac2|chr6 (34652522-34653000)
               

               
               229-384, gnl|rn3|chr2 (59797575-59797178)
               


               
               636-960, gnl|bosTau2|chr19 (28081623-28081290)
               

               
               636-960, gnl|Hg17|chr5 (34935250-34935914)
               

               
               636-960, gnl|Mm7|chr15 (10561831-10561456)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               229-384, gnl|bosTau2|chr19 (28095710-28095555)
               

               
               229-384, gnl|canFam2|chr4 (76610950-76610496)
               

               
               229-384, gnl|dasNov1|scaffold_165546 (1166-1625)
               

               
               229-384, gnl|echTel1|scaffold_317998 (10570-10137)
               

               
               229-384, gnl|hg17|chr5 (34922016-34922495)
               

               
               229-384, gnl|Hg17|chr5 (34922260-34922415)
               

               
               229-384, gnl|mm7|chr15 (10577098-10576638)
               

               
               229-384, gnl|Mm7|chr15 (10576882-10576719)
               

               
               229-384, gnl|oryCun1|scaffold_111459 (14523-14949)
               

               
               229-384, gnl|panTro1|chr4 (81910085-81909611)
               

               
               229-384, gnl|rheMac2|chr6 (34652522-34653000)
               

               
               229-384, gnl|rn3|chr2 (59797575-59797178)
               


               
               636-960, gnl|bosTau2|chr19 (28081623-28081290)
               

               
               636-960, gnl|Hg17|chr5 (34935250-34935914)
               

               
               636-960, gnl|Mm7|chr15 (10561831-10561456)

	229-384, gnl\|bosTau2\|chr19 (28095710-28095555)
	229-384, gnl\|canFam2\|chr4 (76610950-76610496)
	229-384, gnl\|dasNov1\|scaffold_165546 (1166-1625)
	229-384, gnl\|echTel1\|scaffold_317998 (10570-10137)
	229-384, gnl\|hg17\|chr5 (34922016-34922495)
	229-384, gnl\|Hg17\|chr5 (34922260-34922415)
	229-384, gnl\|mm7\|chr15 (10577098-10576638)
	229-384, gnl\|Mm7\|chr15 (10576882-10576719)
	229-384, gnl\|oryCun1\|scaffold_111459 (14523-14949)
	229-384, gnl\|panTro1\|chr4 (81910085-81909611)
	229-384, gnl\|rheMac2\|chr6 (34652522-34653000)
	229-384, gnl\|rn3\|chr2 (59797575-59797178)

	636-960, gnl\|bosTau2\|chr19 (28081623-28081290)
	636-960, gnl\|Hg17\|chr5 (34935250-34935914)
	636-960, gnl\|Mm7\|chr15 (10561831-10561456)