Non-Coding RNA Search

Ss1.1-Pig3-SRG8016M04.3

Sequence:


               
               CTCACACGTTGCCCGGCCAGGGGGAGGAGGGGGAGAGAGGGAGGGCACCTTGGGTGTAGG
ATGCCTTTGTCCTCCACCCATCGAAACCAGCCACCCCCGCCCTGTGCCACCAGTGACCAT
TCTCAGGGGAACTCCCCAGTGGGTGTCGGTGGAGGGGGGGGGAGCACACAGATGTTCCCC
CCATTAGAGGCCCCGAGCTATAAGGTGTGTGGGTGAGGGCTTTGGATAGGTTTCCTTCTG
CTCCCCTCTTTTCTAGACATAGGTTGCTTGGCTGTCTGCCCCCTTATAGGCAGCCCCCTA
GAGGAGAAATGTAGGATTTTTTTTTTTTCTTTAACTGCTGTGAACCCACTTTGGGGGGAG
GAGGAGGAAGAAGAAACAGCCTGTGTTTTTTATGCCATAATAAAGTCGTCAGCCACAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACACGTTGCCCGGCCAGGGGGAGGAGGGGGAGAGAGGGAGGGCACCTTGGGTGTAGG
ATGCCTTTGTCCTCCACCCATCGAAACCAGCCACCCCCGCCCTGTGCCACCAGTGACCAT
TCTCAGGGGAACTCCCCAGTGGGTGTCGGTGGAGGGGGGGGGAGCACACAGATGTTCCCC
CCATTAGAGGCCCCGAGCTATAAGGTGTGTGGGTGAGGGCTTTGGATAGGTTTCCTTCTG
CTCCCCTCTTTTCTAGACATAGGTTGCTTGGCTGTCTGCCCCCTTATAGGCAGCCCCCTA
GAGGAGAAATGTAGGATTTTTTTTTTTTCTTTAACTGCTGTGAACCCACTTTGGGGGGAG
GAGGAGGAAGAAGAAACAGCCTGTGTTTTTTATGCCATAATAAAGTCGTCAGCCACAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-379, + strand, RNAz p=0.859048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-379, + strand, RNAz p=0.859048

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               5-172, - strand, RNAmicro p=0.998422

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               5-172, - strand, RNAmicro p=0.998422

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-417, gnl|bosTau2|chr19 (30677187-30677607)
               

               
               5-417, gnl|Hg17|chr17 (43277688-43277278)
               

               
               5-417, gnl|Mm7|chr11 (97133367-97133778)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-417, gnl|bosTau2|chr19 (30677187-30677607)
               

               
               5-417, gnl|Hg17|chr17 (43277688-43277278)
               

               
               5-417, gnl|Mm7|chr11 (97133367-97133778)

	5-417, gnl\|bosTau2\|chr19 (30677187-30677607)
	5-417, gnl\|Hg17\|chr17 (43277688-43277278)
	5-417, gnl\|Mm7\|chr11 (97133367-97133778)