Ss1.1-Pig3-SRG8016N24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCACCCATGATGCCACCCCAGGTAGCCAGTGGGAGGGAAGCAATGCTTTGGACCTGC CATCCGCTTGTGACATAAGGGATTACGTGTTGCATAGACCCATCCAGGAGGCCAGCAGCG AGGCTTTCAGTTCTGAGGAAGCCCTTTCATTTCCTTGCTCTTCTGATGTGGATCCAGACA CGAGGGGACCTAAATACTGAACAGAGTGATTCCTGGACCTCTGAGAACTTCTGGCTTAAC CATCCTGTGAAGGGCTGGCCANATACCCATACAGAGGATGATGGACTTCGGGAATCTCTG GATAGATTCTATGAAGTGTTTGGCCATTCTCATCCAGCCTCTGGAAATCCACTCTCCACA TCTGTCTGCCAGTGCCTGTCTCATAAAATCAGCGAA------------------------ ------------------------------------------------AAAAAAAACAAA AAAGATAACAAAACCTCCTAGTGCTCCTGTATGTTTACCTTCAGAAATATTAAAATTAAT TTAAAAAAAAAAGATTATCATACTAAGTGAAGTAAGCCAGACAAAGACAAATATATGATA TTCCTTATATGTGGGATCTAAAAAAAATGATACAAATGAATTTATATTCAAAACAGACCC ATAAGCATAGAAAACAAACTTACGGTTACCAAAGGGAAAGGAAGGAGGAATAAATTAGGA ------------------------------------------------------------ ------------------------------------AAAGGAAAAGAATCTGAAAAAAAT ACATATGTATGTATTTATAATTGAAACACTTTGCTGTACACTTAAAACTAACACAATATG GTAAATAACTACGCTGCATTTTTTTTTAAATGGAAAAATGAATAAATATGGTTCCGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCACCCATGATGCCACCCCAGGTAGCCAGTGGGAGGGAAGCAATGCTTTGGACCTGC CATCCGCTTGTGACATAAGGGATTACGTGTTGCATAGACCCATCCAGGAGGCCAGCAGCG AGGCTTTCAGTTCTGAGGAAGCCCTTTCATTTCCTTGCTCTTCTGATGTGGATCCAGACA CGAGGGGACCTAAATACTGAACAGAGTGATTCCTGGACCTCTGAGAACTTCTGGCTTAAC CATCCTGTGAAGGGCTGGCCANATACCCATACAGAGGATGATGGACTTCGGGAATCTCTG GATAGATTCTATGAAGTGTTTGGCCATTCTCATCCAGCCTCTGGAAATCCACTCTCCACA TCTGTCTGCCAGTGCCTGTCTCATAAAATCAGCGAA------------------------ ------------------------------------------------AAAAAAAACAAA AAAGATAACAAAACCTCCTAGTGCTCCTGTATGTTTACCTTCAGAAATATTAAAATTAAT TTAAAAAAAAAAGATTATCATACTAAGTGAAGTAAGCCAGACAAAGACAAATATATGATA TTCCTTATATGTGGGATCTAAAAAAAATGATACAAATGAATTTATATTCAAAACAGACCC ATAAGCATAGAAAACAAACTTACGGTTACCAAAGGGAAAGGAAGGAGGAATAAATTAGGA ------------------------------------------------------------ ------------------------------------AAAGGAAAAGAATCTGAAAAAAAT ACATATGTATGTATTTATAATTGAAACACTTTGCTGTACACTTAAAACTAACACAATATG GTAAATAACTACGCTGCATTTTTTTTTAAATGGAAAAATGAATAAATATGGTTCCGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 202-321, - strand, RNAz p=0.551595 | |
| 229-348, - strand, RNAz p=0.731796 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 202-321, - strand, RNAz p=0.551595 | |
| 229-348, - strand, RNAz p=0.731796 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr13 (33164775-33164599) | |
| 1-177, gnl|canFam2|chr24 (19026137-19025945) | |
| 1-177, gnl|canFam2|chr24 (19026197-19025926) | |
| 1-177, gnl|dasNov1|scaffold_7269 (6262-6029) | |
| 1-177, gnl|dasNov1|scaffold_91072 (400-598) | |
| 1-177, gnl|echTel1|scaffold_324880 (165893-165718) | |
| 1-177, gnl|echTel1|scaffold_324880 (165961-165699) | |
| 1-177, gnl|hg17|chr1 (89101067-89101263) | |
| 1-177, gnl|hg17|chr20 (5701424-5701706) | |
| 1-177, gnl|Hg17|chr20 (5701513-5701689) | |
| 1-177, gnl|mm7|chr2 (132432731-132433001) | |
| 1-177, gnl|Mm7|chr2 (132432808-132432984) | |
| 1-177, gnl|oryCun1|scaffold_207518 (4088-4254) | |
| 1-177, gnl|oryCun1|scaffold_207518 (3976-4273) | |
| 1-177, gnl|panTro1|chr1 (87904392-87904588) | |
| 1-177, gnl|panTro1|chr21 (5686098-5686380) | |
| 1-177, gnl|rheMac2|chr1 (91649786-91649981) | |
| 1-177, gnl|rheMac2|chr10 (39067147-39067424) | |
| 1-177, gnl|rn3|chr3 (120362414-120362588) | |
| 1-177, gnl|rn3|chr3 (120362358-120362607) | |
| 190-401, gnl|bosTau2|chr13 (33056228-33056017) | |
| 190-401, gnl|canFam2|chr24 (18956640-18956283) | |
| 190-401, gnl|dasNov1|scaffold_102568 (4455-4104) | |
| 190-401, gnl|echTel1|scaffold_284768 (99284-98934) | |
| 190-401, gnl|hg17|chr20 (5791616-5791980) | |
| 190-401, gnl|Hg17|chr20 (5791681-5791889) | |
| 190-401, gnl|loxAfr1|scaffold_28739 (8923-9291) | |
| 190-401, gnl|mm7|chr2 (132491011-132491379) | |
| 190-401, gnl|Mm7|chr2 (132491077-132491288) | |
| 190-401, gnl|monDom2|scaffold_1 (36108238-36108601) | |
| 190-401, gnl|oryCun1|scaffold_200763 (89504-89144) | |
| 190-401, gnl|panTro1|chr21 (5771091-5771455) | |
| 190-401, gnl|rheMac2|chr10 (39162761-39163125) | |
| 190-401, gnl|rn3|chr3 (120441524-120441892) | |
| 480-738, gnl|bosTau2|chr10 (9445226-9444960) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr13 (33164775-33164599) | |
| 1-177, gnl|canFam2|chr24 (19026137-19025945) | |
| 1-177, gnl|canFam2|chr24 (19026197-19025926) | |
| 1-177, gnl|dasNov1|scaffold_7269 (6262-6029) | |
| 1-177, gnl|dasNov1|scaffold_91072 (400-598) | |
| 1-177, gnl|echTel1|scaffold_324880 (165893-165718) | |
| 1-177, gnl|echTel1|scaffold_324880 (165961-165699) | |
| 1-177, gnl|hg17|chr1 (89101067-89101263) | |
| 1-177, gnl|hg17|chr20 (5701424-5701706) | |
| 1-177, gnl|Hg17|chr20 (5701513-5701689) | |
| 1-177, gnl|mm7|chr2 (132432731-132433001) | |
| 1-177, gnl|Mm7|chr2 (132432808-132432984) | |
| 1-177, gnl|oryCun1|scaffold_207518 (4088-4254) | |
| 1-177, gnl|oryCun1|scaffold_207518 (3976-4273) | |
| 1-177, gnl|panTro1|chr1 (87904392-87904588) | |
| 1-177, gnl|panTro1|chr21 (5686098-5686380) | |
| 1-177, gnl|rheMac2|chr1 (91649786-91649981) | |
| 1-177, gnl|rheMac2|chr10 (39067147-39067424) | |
| 1-177, gnl|rn3|chr3 (120362414-120362588) | |
| 1-177, gnl|rn3|chr3 (120362358-120362607) | |
| 190-401, gnl|bosTau2|chr13 (33056228-33056017) | |
| 190-401, gnl|canFam2|chr24 (18956640-18956283) | |
| 190-401, gnl|dasNov1|scaffold_102568 (4455-4104) | |
| 190-401, gnl|echTel1|scaffold_284768 (99284-98934) | |
| 190-401, gnl|hg17|chr20 (5791616-5791980) | |
| 190-401, gnl|Hg17|chr20 (5791681-5791889) | |
| 190-401, gnl|loxAfr1|scaffold_28739 (8923-9291) | |
| 190-401, gnl|mm7|chr2 (132491011-132491379) | |
| 190-401, gnl|Mm7|chr2 (132491077-132491288) | |
| 190-401, gnl|monDom2|scaffold_1 (36108238-36108601) | |
| 190-401, gnl|oryCun1|scaffold_200763 (89504-89144) | |
| 190-401, gnl|panTro1|chr21 (5771091-5771455) | |
| 190-401, gnl|rheMac2|chr10 (39162761-39163125) | |
| 190-401, gnl|rn3|chr3 (120441524-120441892) | |
| 480-738, gnl|bosTau2|chr10 (9445226-9444960) |