Non-Coding RNA Search

Ss1.1-Pig3-SRG8016O19.3

Sequence:


               
               GAGACCGAATGGACCATAATGGTTGGACAGGGGAGTGATCAACATTCCTTAGGTTAACAT
CGATGTTAAGCCAGAATATCGATCTTTTGAGGGATGGGGCATTTACCTGATCAAACAGGC
TGTTCATTGCACAGAATTTCTCTCTTGCTTCTTTTTATTTAATTCTTACTCAAGCAAGAA
ATAATTTCTTACCCCAAAGTAGACATTGGTACATATTTTACCAGGCACATCATTGGGAGT
GAAGCCTGGTAAAGCTCCACGTGAGTACACAGAGGTGCACTCTCAAGAGGGTATGTAACC
CATCCATGGCTTAAAAAAATAATAAAGAGATCCTCCTGTCCTTTTGGAGAAATTTACTCT
TTCAGTGGATATAGTGCTCATTTAGAACGGTTGACCTGTTGATTTTTAACATAGTTATTG
GTTTAAAGCAATGGCTTATTTTTATGGGACCATGTAGTGTCTCTGGAAAATTAAATTTTA
GATGTGTACCATCTGTAAAATCCAGGATTTTCAGTGTGTTATAGGAGTGTGTGAGCTGGT
TAACCCATTATTATGGATCTTCAAATTACTGAGATACCAAATAAATGTCATTTTGTAATT
TGAGTTTTTTAAATATTGAGATTGACTTTCTTGTCAAAAAGAACTATTTAATAATTGCTT
GTTTATACATTAAGTCAATTAAATCTAGAATCTTTAAGTTCTACTTAGTGTTTTTATGTA
CTATTTATACATTTTGTAATTTGTATATAAAAATAACTTTTGACTTTGTATAAAAATAGA
AATGATGCTTTGACTTGTTCTTGATGAATATTTAACTTAATAAATTTAACAGAGCAGACT
CCCCCGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACCGAATGGACCATAATGGTTGGACAGGGGAGTGATCAACATTCCTTAGGTTAACAT
CGATGTTAAGCCAGAATATCGATCTTTTGAGGGATGGGGCATTTACCTGATCAAACAGGC
TGTTCATTGCACAGAATTTCTCTCTTGCTTCTTTTTATTTAATTCTTACTCAAGCAAGAA
ATAATTTCTTACCCCAAAGTAGACATTGGTACATATTTTACCAGGCACATCATTGGGAGT
GAAGCCTGGTAAAGCTCCACGTGAGTACACAGAGGTGCACTCTCAAGAGGGTATGTAACC
CATCCATGGCTTAAAAAAATAATAAAGAGATCCTCCTGTCCTTTTGGAGAAATTTACTCT
TTCAGTGGATATAGTGCTCATTTAGAACGGTTGACCTGTTGATTTTTAACATAGTTATTG
GTTTAAAGCAATGGCTTATTTTTATGGGACCATGTAGTGTCTCTGGAAAATTAAATTTTA
GATGTGTACCATCTGTAAAATCCAGGATTTTCAGTGTGTTATAGGAGTGTGTGAGCTGGT
TAACCCATTATTATGGATCTTCAAATTACTGAGATACCAAATAAATGTCATTTTGTAATT
TGAGTTTTTTAAATATTGAGATTGACTTTCTTGTCAAAAAGAACTATTTAATAATTGCTT
GTTTATACATTAAGTCAATTAAATCTAGAATCTTTAAGTTCTACTTAGTGTTTTTATGTA
CTATTTATACATTTTGTAATTTGTATATAAAAATAACTTTTGACTTTGTATAAAAATAGA
AATGATGCTTTGACTTGTTCTTGATGAATATTTAACTTAATAAATTTAACAGAGCAGACT
CCCCCGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               113-232, - strand, RNAz p=0.513316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-232, - strand, RNAz p=0.513316

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-850, gnl|bosTau2|chr19 (7948521-7947706)
               

               
               1-850, gnl|Hg17|chr17 (31161894-31162698)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-850, gnl|bosTau2|chr19 (7948521-7947706)
               

               
               1-850, gnl|Hg17|chr17 (31161894-31162698)

	1-850, gnl\|bosTau2\|chr19 (7948521-7947706)
	1-850, gnl\|Hg17\|chr17 (31161894-31162698)