Non-Coding RNA Search

Ss1.1-Pig3-SRG8017D04.3

Sequence:


               
               GAAATGCAGAAAATGTTGAGATTTCATTTACATAGTGTTCCCATGATGATGTGCTGGAAT
TCTTACCAGTCTCATAAAAGCCAGCCCTACCATCTGCTTGCTGAGATCAGGGAATAAACC
ATCAATCCAGCTAGTGCCATTTAGCTTTCTATCACTGCCCCCTCCACCCAGGAAGAAAAA
ATTCACATGCTCTATAGATCTGTTTACTCTCAGACCAAATTGTATTATTATTATTTGTTT
TCCCCTTACCAGATAATTTGTTATGGTTTCTCAGTGATGGAAATATTTGGCGTTTCACTG
AGAAGATCTTTGAATATAAATGTCTCACTAAGAATTAAAATAACGCCTCAGTTGGTTGGA
GAGAATGTTGCAAACACATTGGAATCCATTGTTGCCAGCAGAGTAGAACCATCCAATATG
CATTTATGTTACCTGATTCGTGCCCTGGAGATATCACAGAGCTGCTTTCTCTGATCAGAG
CTCTTACAGTGATACTTAAAAATTAATTGAATTTTCAAGTATGTCAGCTTTAGCTGTTGC
AGTTGATGGGCCAATAGCTGAGGAGGTTTATTAAAAATATACTGCCACCTACAGCACTAT
TTGACTCCCTTTGACAGGGCTCCTGTCATGAATGTTAATTAGAGTTAATTTTTTTTTTTT
GACTTACGCATGTATGTATCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATGCAGAAAATGTTGAGATTTCATTTACATAGTGTTCCCATGATGATGTGCTGGAAT
TCTTACCAGTCTCATAAAAGCCAGCCCTACCATCTGCTTGCTGAGATCAGGGAATAAACC
ATCAATCCAGCTAGTGCCATTTAGCTTTCTATCACTGCCCCCTCCACCCAGGAAGAAAAA
ATTCACATGCTCTATAGATCTGTTTACTCTCAGACCAAATTGTATTATTATTATTTGTTT
TCCCCTTACCAGATAATTTGTTATGGTTTCTCAGTGATGGAAATATTTGGCGTTTCACTG
AGAAGATCTTTGAATATAAATGTCTCACTAAGAATTAAAATAACGCCTCAGTTGGTTGGA
GAGAATGTTGCAAACACATTGGAATCCATTGTTGCCAGCAGAGTAGAACCATCCAATATG
CATTTATGTTACCTGATTCGTGCCCTGGAGATATCACAGAGCTGCTTTCTCTGATCAGAG
CTCTTACAGTGATACTTAAAAATTAATTGAATTTTCAAGTATGTCAGCTTTAGCTGTTGC
AGTTGATGGGCCAATAGCTGAGGAGGTTTATTAAAAATATACTGCCACCTACAGCACTAT
TTGACTCCCTTTGACAGGGCTCCTGTCATGAATGTTAATTAGAGTTAATTTTTTTTTTTT
GACTTACGCATGTATGTATCTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-430, + strand, RNAz p=0.65314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-430, + strand, RNAz p=0.65314

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-601, gnl|bosTau2|chr11 (24892295-24891692)
               

               
               1-601, gnl|Hg17|chr2 (50763585-50762993)
               

               
               1-601, gnl|Mm7|chr17 (89013676-89013132)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-601, gnl|bosTau2|chr11 (24892295-24891692)
               

               
               1-601, gnl|Hg17|chr2 (50763585-50762993)
               

               
               1-601, gnl|Mm7|chr17 (89013676-89013132)

	1-601, gnl\|bosTau2\|chr11 (24892295-24891692)
	1-601, gnl\|Hg17\|chr2 (50763585-50762993)
	1-601, gnl\|Mm7\|chr17 (89013676-89013132)