Non-Coding RNA Search

Ss1.1-Pig3-SRG8017D12.5

Sequence:


               
               GCGGCTCGAGCCCGACACCCCCCTTGCAGCCTCTCAGGTGGAATACCGGCTGCGGACCGC
TTGCGGGAAGTCTGTGATGACAGCCGGATGGCTCAACTGGGGCAGCACTGCCCGCACAGG
AGTCCCCATCTACTACCTGCTTCCACTGCCTGGCACAACTGCCCTACAACCCTCACATCA
GCAGGGCTGGTTGGAATTCCTGTCCTCCATCCTGACCTCGGCTCATGAAAAAGGCACGAC
TTTGGTATTGAAAGGAGTATCGAATGCATGCTTTGGGGAATAAGCGGGGGGAATACAGCT
TATGCAATATGCTTTCGCACATTCCCCGCAAGCATCTGGACTTGGAGAAAGTGTCTGATA
CAAACCCTTGGAGTAGACGAACCTTGGTGTGGTGGGCCCATGCCTGTCTGTCCTGATAGG
CGTTTTATGGCCTGTGTCATTTTCCTCGATGGTGCCCGGGAGCTTGGGACACCGGTCATA
TGCTACCAGCCACAACTTTTCAAAAACAAACTTGGAATAAAGTCACAAGAGGAAATGAGG
ACCATTTGGAAACTTGAGAACCCACACGTTCTCTATGCGATTTTTTTTTTTTTATCTTTC
AGGAAGGATTTCAAAGTTTCAACCTGTTTTAATGCTAGCCCATCTGGCGGCTTTATTAAT
GAAAACAGCAGCATCTTATAATGCTCGCGTGTGAGGCAGAACTTTCCAAAAAATTACAGA
AAGAACTTTTGGATCTGATGTACCATATTTTGTCTCCCCCCCTCCTCTTTGGGGGGTTGG
GGGGGGACCAACTGGAGCACATTTTAGAGAGAGTATGTGCATAGAAATATGCAGTGAGTC
ATGCCTTGTGTTGTAGGTCTGTTCCGGTGCGTGGGGTTTCCAGAACAATTACATAAGTGT
TAGCATAGCCAGGAACTTTTGACATTTGTGGCAGCTTTAATGGAGTTCTTTTCTTCATTG
AAAATATCCTAATTGTTGTTGCCTTAAATTTAAAATGCATAAAACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCCCGACACCCCCCTTGCAGCCTCTCAGGTGGAATACCGGCTGCGGACCGC
TTGCGGGAAGTCTGTGATGACAGCCGGATGGCTCAACTGGGGCAGCACTGCCCGCACAGG
AGTCCCCATCTACTACCTGCTTCCACTGCCTGGCACAACTGCCCTACAACCCTCACATCA
GCAGGGCTGGTTGGAATTCCTGTCCTCCATCCTGACCTCGGCTCATGAAAAAGGCACGAC
TTTGGTATTGAAAGGAGTATCGAATGCATGCTTTGGGGAATAAGCGGGGGGAATACAGCT
TATGCAATATGCTTTCGCACATTCCCCGCAAGCATCTGGACTTGGAGAAAGTGTCTGATA
CAAACCCTTGGAGTAGACGAACCTTGGTGTGGTGGGCCCATGCCTGTCTGTCCTGATAGG
CGTTTTATGGCCTGTGTCATTTTCCTCGATGGTGCCCGGGAGCTTGGGACACCGGTCATA
TGCTACCAGCCACAACTTTTCAAAAACAAACTTGGAATAAAGTCACAAGAGGAAATGAGG
ACCATTTGGAAACTTGAGAACCCACACGTTCTCTATGCGATTTTTTTTTTTTTATCTTTC
AGGAAGGATTTCAAAGTTTCAACCTGTTTTAATGCTAGCCCATCTGGCGGCTTTATTAAT
GAAAACAGCAGCATCTTATAATGCTCGCGTGTGAGGCAGAACTTTCCAAAAAATTACAGA
AAGAACTTTTGGATCTGATGTACCATATTTTGTCTCCCCCCCTCCTCTTTGGGGGGTTGG
GGGGGGACCAACTGGAGCACATTTTAGAGAGAGTATGTGCATAGAAATATGCAGTGAGTC
ATGCCTTGTGTTGTAGGTCTGTTCCGGTGCGTGGGGTTTCCAGAACAATTACATAAGTGT
TAGCATAGCCAGGAACTTTTGACATTTGTGGCAGCTTTAATGGAGTTCTTTTCTTCATTG
AAAATATCCTAATTGTTGTTGCCTTAAATTTAAAATGCATAAAACCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               756-869, + strand, RNAz p=0.605922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               756-869, + strand, RNAz p=0.605922

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               362-1005, gnl|bosTau2|chr5 (12745620-12745003)
               

               
               362-1005, gnl|Hg17|chr12 (88270072-88270734)
               

               
               362-1005, gnl|Mm7|chr10 (98800846-98800140)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               362-1005, gnl|bosTau2|chr5 (12745620-12745003)
               

               
               362-1005, gnl|Hg17|chr12 (88270072-88270734)
               

               
               362-1005, gnl|Mm7|chr10 (98800846-98800140)

	362-1005, gnl\|bosTau2\|chr5 (12745620-12745003)
	362-1005, gnl\|Hg17\|chr12 (88270072-88270734)
	362-1005, gnl\|Mm7\|chr10 (98800846-98800140)