Non-Coding RNA Search

Ss1.1-Pig3-SRG8017E05.3

Sequence:


               
               TCTAAGTCATAATCCCGCCCAGGCGGAACGATACGGGAGCGCCGCGGGAGCCTCGGTTGG
CCTCGGATAGCCGGTCCCCCGCCGTCCCCGCCGGCGGGCCGCCGCGCGCGCCCGCGTGCG
GCGTGTCCCGTCGCGCGTCGGGACCGGGGTCCGGTGCGGAGAGCCCTTCGTCCTGGGAAA
CGGGGCGCGGCCGGAAAGCGCGGCCGCCCCCTCGCCCGTCACGCACCGCACGTTCCTCGA
GCCGCCTCGAGCCGCCTCTCTCTGAGGCAGAAACACTGGCCAGTTGCCGGGAGGATGATG
GCCCCGAGCCTATCCCCGAAAGGAGTGTGAGAGGTTGGGACTGACTCTGGCTGCCGCTCG
GTTCTCCTAGAGAAGAGTTTCTCTCCCTCGGCCTTCCCGCAGCCTCTGCGAAGCGCTGGC
GGAGAACCCAAGGACAAAAATTAAAATGAAGGAGAGAAAAATGGGCGTCGTGACTTGAGA
GCTCCCCAGGTCTTACCGACCCTCTGCCCTCTTTGCGGGCCGGCGCGCCACACCACAGTC
CATTTTCCTTTTCCCAACTGCCTGCTATCTGCAACAGATACCTCGACCTGGATCTCCGGA
TTGCCAGGGGGCGTAGACTCTGCGAGAAAAACCAGCGGAGCGAGATCAAAAGTTGCGGGG
TTTGAACAAATCCGGGACCTGGTGGCCCACCGGAGGTGTTACCGGGTTTCCTTTCTGTTT
CATATTCTGTATTCATCACATATATAATATATATATATATCCACATGCCATGTACACACC
CGCTGCCATACACTACAGGAGTCAATAAACAAGGTGCAATATTTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAAGTCATAATCCCGCCCAGGCGGAACGATACGGGAGCGCCGCGGGAGCCTCGGTTGG
CCTCGGATAGCCGGTCCCCCGCCGTCCCCGCCGGCGGGCCGCCGCGCGCGCCCGCGTGCG
GCGTGTCCCGTCGCGCGTCGGGACCGGGGTCCGGTGCGGAGAGCCCTTCGTCCTGGGAAA
CGGGGCGCGGCCGGAAAGCGCGGCCGCCCCCTCGCCCGTCACGCACCGCACGTTCCTCGA
GCCGCCTCGAGCCGCCTCTCTCTGAGGCAGAAACACTGGCCAGTTGCCGGGAGGATGATG
GCCCCGAGCCTATCCCCGAAAGGAGTGTGAGAGGTTGGGACTGACTCTGGCTGCCGCTCG
GTTCTCCTAGAGAAGAGTTTCTCTCCCTCGGCCTTCCCGCAGCCTCTGCGAAGCGCTGGC
GGAGAACCCAAGGACAAAAATTAAAATGAAGGAGAGAAAAATGGGCGTCGTGACTTGAGA
GCTCCCCAGGTCTTACCGACCCTCTGCCCTCTTTGCGGGCCGGCGCGCCACACCACAGTC
CATTTTCCTTTTCCCAACTGCCTGCTATCTGCAACAGATACCTCGACCTGGATCTCCGGA
TTGCCAGGGGGCGTAGACTCTGCGAGAAAAACCAGCGGAGCGAGATCAAAAGTTGCGGGG
TTTGAACAAATCCGGGACCTGGTGGCCCACCGGAGGTGTTACCGGGTTTCCTTTCTGTTT
CATATTCTGTATTCATCACATATATAATATATATATATATCCACATGCCATGTACACACC
CGCTGCCATACACTACAGGAGTCAATAAACAAGGTGCAATATTTTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               294-469, + strand, RNAz p=0.992806

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-469, + strand, RNAz p=0.992806

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145285, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145285, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-252, gnl|bosTau2|chr17 (22514911-22514660)
               

               
               1-252, gnl|Hg17|chr12 (126175811-126175439)
               

               
               1-252, gnl|Mm7|chr3_random (220-481)
               


               
               256-828, gnl|bosTau2|chr26 (11933563-11934147)
               

               
               256-828, gnl|Hg17|chr10 (101285673-101286270)
               

               
               256-828, gnl|Mm7|chr19 (43509129-43509765)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-252, gnl|bosTau2|chr17 (22514911-22514660)
               

               
               1-252, gnl|Hg17|chr12 (126175811-126175439)
               

               
               1-252, gnl|Mm7|chr3_random (220-481)
               


               
               256-828, gnl|bosTau2|chr26 (11933563-11934147)
               

               
               256-828, gnl|Hg17|chr10 (101285673-101286270)
               

               
               256-828, gnl|Mm7|chr19 (43509129-43509765)

	1-252, gnl\|bosTau2\|chr17 (22514911-22514660)
	1-252, gnl\|Hg17\|chr12 (126175811-126175439)
	1-252, gnl\|Mm7\|chr3_random (220-481)

	256-828, gnl\|bosTau2\|chr26 (11933563-11934147)
	256-828, gnl\|Hg17\|chr10 (101285673-101286270)
	256-828, gnl\|Mm7\|chr19 (43509129-43509765)