Non-Coding RNA Search

Ss1.1-Pig3-SRG8017H14.3

Sequence:


               
               TGAAGCACAAGGTCAAAATTTTAAAACGGGTGAGCTACTCATTAATGCATTCTTTTTATT
TAAGAACTTTGTGTGGACTGAGAATTTGAAATTTTTCTCTAGATCTCACTGTAGTATACA
TTTTCATATTCATTTTTCCATAAAAATGAATTTTTATTTAAAATATTTTGTCAGTCTTGG
TGAAACCAGGTAGTGACATCTTCAAAATGTGCAGATCCAATTCTTACAGTCTGTGCATAT
ATCTAGTCTCTAGTTTGGTGCTTGGATTTTCTGTGGTAGAATGTGTGTGTGATCTGGTGA
TAAGTGTAAATTGTGCTTGCTGATAAGTTTTTAAAGTTTTTCAGTCCATAAATATCTATG
AATCCTTAAACCATATTTGGCATTATTATTTTCAAGTGGAACAGTTCTCTGTAAGGAAAA
GTAATCTTAGTTCTTTTGATTTTTTTTTGTCCCAGTTTTTGCTTGGAATCCTTATCTCAT
AATTTTTCTCTTAAGATGTAGACTCTTAAAAAGTTGTCAGTTTTCCCTAATCTTGTTTTT
AACTATGTTCTTGTAGTATTTTCTAAATAGAAATTTTAAAATGTTTAGTCAGCTATAGGA
GAAATGTATAAAGCACTTTACCTGATTACAATTTTACTTTTATTGCCTACCTTTTTATTT
CCTATGATTTTTCTAACATTATTTTGTTATTCTTGTAGGTAGTGCTAGGGAGGAAACATT
GGCAACAAATGTCTGTGGATAGTCAAGTATGATAATCCAAAACACAACAAACACGAGTTA
TAAAGTTGGAAGGAACCCGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGCACAAGGTCAAAATTTTAAAACGGGTGAGCTACTCATTAATGCATTCTTTTTATT
TAAGAACTTTGTGTGGACTGAGAATTTGAAATTTTTCTCTAGATCTCACTGTAGTATACA
TTTTCATATTCATTTTTCCATAAAAATGAATTTTTATTTAAAATATTTTGTCAGTCTTGG
TGAAACCAGGTAGTGACATCTTCAAAATGTGCAGATCCAATTCTTACAGTCTGTGCATAT
ATCTAGTCTCTAGTTTGGTGCTTGGATTTTCTGTGGTAGAATGTGTGTGTGATCTGGTGA
TAAGTGTAAATTGTGCTTGCTGATAAGTTTTTAAAGTTTTTCAGTCCATAAATATCTATG
AATCCTTAAACCATATTTGGCATTATTATTTTCAAGTGGAACAGTTCTCTGTAAGGAAAA
GTAATCTTAGTTCTTTTGATTTTTTTTTGTCCCAGTTTTTGCTTGGAATCCTTATCTCAT
AATTTTTCTCTTAAGATGTAGACTCTTAAAAAGTTGTCAGTTTTCCCTAATCTTGTTTTT
AACTATGTTCTTGTAGTATTTTCTAAATAGAAATTTTAAAATGTTTAGTCAGCTATAGGA
GAAATGTATAAAGCACTTTACCTGATTACAATTTTACTTTTATTGCCTACCTTTTTATTT
CCTATGATTTTTCTAACATTATTTTGTTATTCTTGTAGGTAGTGCTAGGGAGGAAACATT
GGCAACAAATGTCTGTGGATAGTCAAGTATGATAATCCAAAACACAACAAACACGAGTTA
TAAAGTTGGAAGGAACCCGGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               307-418, - strand, RNAz p=0.958257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-418, - strand, RNAz p=0.958257

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-545, gnl|bosTau2|chr9 (71194-71713)
               

               
               1-545, gnl|Mm7|chr1 (31047503-31047015)
               


               
               565-803, gnl|bosTau2|chr9 (71981-72223)
               

               
               565-803, gnl|Hg17|chr6 (64460303-64460547)
               

               
               565-803, gnl|Mm7|chr1 (31046809-31046593)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-545, gnl|bosTau2|chr9 (71194-71713)
               

               
               1-545, gnl|Mm7|chr1 (31047503-31047015)
               


               
               565-803, gnl|bosTau2|chr9 (71981-72223)
               

               
               565-803, gnl|Hg17|chr6 (64460303-64460547)
               

               
               565-803, gnl|Mm7|chr1 (31046809-31046593)

	1-545, gnl\|bosTau2\|chr9 (71194-71713)
	1-545, gnl\|Mm7\|chr1 (31047503-31047015)

	565-803, gnl\|bosTau2\|chr9 (71981-72223)
	565-803, gnl\|Hg17\|chr6 (64460303-64460547)
	565-803, gnl\|Mm7\|chr1 (31046809-31046593)