Non-Coding RNA Search

Ss1.1-Pig3-SRG8017L01.5

Sequence:


               
               TGACAGTTTCAATAACAAAAGAACATTTTCATCATTTGTGTTGGTGATTTCTCCAAAGCA
GTGCCTTCTGAAAACCATCTTATAAAACTCCAGCTTTGTTGAAAATCACAGACCTCATGT
CATCACACACTGGCCTCCATCAGGGATTCCCCTGTGGCTCCAAAGATATCTAGGATTCTA
CAAACTTTTTATATTATACACCTTGCCATATTTAATATTAGTAGCAGAGAAAGACCCCTC
TTTCTCATTGCTGTATGAACTTTTTTATATTGCTATTTTTTGTATATTTCTTGTATAAAC
TAATTCATGCATGTGTTTGTCTTGGATAATTAAGGAAAAATATATCTAGATCACGCTTTG
CTTTTTATTGTGATTTTCCACCTGCTGTCTGAATATTTCTTAAGGATTTATAAACAGAAC
AAATGCTGCTATTGCATTAGCTGCGAGAATGCACTTTAGACATATTGGACAATTCAACCT
GAGATATCAGACTCGCCAATACTAAAACCATTTTAGGAAGGTGTTTGGAATTTTGTATGT
ATGTACTTTCTGACATTTAGATATGCCAAAAGAAATGAAATAAAAGCACTAAGAAATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACAGTTTCAATAACAAAAGAACATTTTCATCATTTGTGTTGGTGATTTCTCCAAAGCA
GTGCCTTCTGAAAACCATCTTATAAAACTCCAGCTTTGTTGAAAATCACAGACCTCATGT
CATCACACACTGGCCTCCATCAGGGATTCCCCTGTGGCTCCAAAGATATCTAGGATTCTA
CAAACTTTTTATATTATACACCTTGCCATATTTAATATTAGTAGCAGAGAAAGACCCCTC
TTTCTCATTGCTGTATGAACTTTTTTATATTGCTATTTTTTGTATATTTCTTGTATAAAC
TAATTCATGCATGTGTTTGTCTTGGATAATTAAGGAAAAATATATCTAGATCACGCTTTG
CTTTTTATTGTGATTTTCCACCTGCTGTCTGAATATTTCTTAAGGATTTATAAACAGAAC
AAATGCTGCTATTGCATTAGCTGCGAGAATGCACTTTAGACATATTGGACAATTCAACCT
GAGATATCAGACTCGCCAATACTAAAACCATTTTAGGAAGGTGTTTGGAATTTTGTATGT
ATGTACTTTCTGACATTTAGATATGCCAAAAGAAATGAAATAAAAGCACTAAGAAATATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-303, - strand, RNAz p=0.997833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-303, - strand, RNAz p=0.997833

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               191-303, 692927 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB442350.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 693519 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB442714.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 696439 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB445188.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 697207 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB445822.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 4089855 BARC 10BOV Bos taurus cDNA clone 10BOV27_I14 3', mRNA 
(gb|CK950633.1|), blast E-value=0, identity=100% 
               

               
               191-303, UMC-bmix_0B02-001-a02 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', 
(gb|CV982688.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               191-303, 692927 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB442350.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 693519 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB442714.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 696439 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB445188.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 697207 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB445822.1|), 
blast E-value=0, identity=100% 
               

               
               191-303, 4089855 BARC 10BOV Bos taurus cDNA clone 10BOV27_I14 3', mRNA 
(gb|CK950633.1|), blast E-value=0, identity=100% 
               

               
               191-303, UMC-bmix_0B02-001-a02 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', 
(gb|CV982688.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-600, gnl|bosTau2|chr9 (22412677-22412079)
               

               
               1-600, gnl|Hg17|chr15 (67527203-67527820)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr9 (22412677-22412079)
               

               
               1-600, gnl|Hg17|chr15 (67527203-67527820)

	191-303, 692927 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB442350.1\|), blast E-value=0, identity=100%
	191-303, 693519 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB442714.1\|), blast E-value=0, identity=100%
	191-303, 696439 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB445188.1\|), blast E-value=0, identity=100%
	191-303, 697207 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB445822.1\|), blast E-value=0, identity=100%
	191-303, 4089855 BARC 10BOV Bos taurus cDNA clone 10BOV27_I14 3', mRNA (gb\|CK950633.1\|), blast E-value=0, identity=100%
	191-303, UMC-bmix_0B02-001-a02 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', (gb\|CV982688.1\|), blast E-value=0, identity=100%

	1-600, gnl\|bosTau2\|chr9 (22412677-22412079)
	1-600, gnl\|Hg17\|chr15 (67527203-67527820)