Non-Coding RNA Search

Ss1.1-Pig3-SRG8017L07.5

Sequence:


               
               AACCTCATGGTTCCTAGTCGGATTTGTTAACCACTGTGCCATGACGGGAACTCCCGTGGG
GTGCTTTTTCAAACAACAAATAATCCCTTGGGAATTTAAATATGTGGGATGCCTCCTGGG
TAAAAATGACGGCCTTAGTGAATCACTGTTAGTATTGGGAGTGTACTGAATCCTTCACTT
GTGTTGGAAGGGAGCAGTTGAAAAACACTGCATTAATATACATGGGAAGACAGTTTATAA
TAGGAAGGTTGTCAAACTTGGAATCAGAGCTCAGGGGAATTAATATTAGCTTAATGACTG
ATATCATCAGTCTATGATACATTGATGTATCTGTCTCCATTTTAAGACTATTGGCTTCAT
GGATCTGATATTCATGCTTATGGGCTGGAACATTTTTTATCCCGTGTACTAGAGTCAAAA
TTTCAGGCTTTCTTTATAGCTGCCATGCAGGTGGTCCTACCATGCGTAATAACATCGTGA
AGCCCTTCTTTCCCAAACCATCCCTGATTTATTCCTTGAGATTAAAGTGTGCACCACAGA
TTGTCCAAATCTTCAGCTTTCTTAGCATGTTGTCAATAGAAGTTCTCTGTGCTTCAGACC
CAGCTCTGGTAAGGCCAGTAGTCATTTGAATGTTCTCCACATAGTCACACTTATTGGTAG
TAGCTGTAGTATTGGAACAGTTGGTCTCTTTAATTGTACCCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCTCATGGTTCCTAGTCGGATTTGTTAACCACTGTGCCATGACGGGAACTCCCGTGGG
GTGCTTTTTCAAACAACAAATAATCCCTTGGGAATTTAAATATGTGGGATGCCTCCTGGG
TAAAAATGACGGCCTTAGTGAATCACTGTTAGTATTGGGAGTGTACTGAATCCTTCACTT
GTGTTGGAAGGGAGCAGTTGAAAAACACTGCATTAATATACATGGGAAGACAGTTTATAA
TAGGAAGGTTGTCAAACTTGGAATCAGAGCTCAGGGGAATTAATATTAGCTTAATGACTG
ATATCATCAGTCTATGATACATTGATGTATCTGTCTCCATTTTAAGACTATTGGCTTCAT
GGATCTGATATTCATGCTTATGGGCTGGAACATTTTTTATCCCGTGTACTAGAGTCAAAA
TTTCAGGCTTTCTTTATAGCTGCCATGCAGGTGGTCCTACCATGCGTAATAACATCGTGA
AGCCCTTCTTTCCCAAACCATCCCTGATTTATTCCTTGAGATTAAAGTGTGCACCACAGA
TTGTCCAAATCTTCAGCTTTCTTAGCATGTTGTCAATAGAAGTTCTCTGTGCTTCAGACC
CAGCTCTGGTAAGGCCAGTAGTCATTTGAATGTTCTCCACATAGTCACACTTATTGGTAG
TAGCTGTAGTATTGGAACAGTTGGTCTCTTTAATTGTACCCCCCAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               276-418, - strand, RNAz p=0.999508
               

               
               287-403, + strand, RNAz p=0.591733

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-418, - strand, RNAz p=0.999508
               

               
               287-403, + strand, RNAz p=0.591733

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               57-460, gnl|bosTau2|chr6 (48649240-48649643)
               

               
               57-460, gnl|canFam2|chr13 (63153874-63154180)
               

               
               57-460, gnl|hg17|chr4 (72239897-72240247)
               

               
               57-460, gnl|Hg17|chr4 (72239939-72240345)
               

               
               57-460, gnl|loxAfr1|scaffold_35805 (13665-13992)
               

               
               57-460, gnl|oryCun1|scaffold_191690 (4283-3956)
               

               
               57-460, gnl|panTro1|chr3 (61504631-61504281)
               

               
               57-460, gnl|rheMac2|chr5 (58616496-58616147)
               


               
               473-684, gnl|bosTau2|chr6 (48649956-48650165)
               

               
               473-684, gnl|Hg17|chr4 (72240636-72240845)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-460, gnl|bosTau2|chr6 (48649240-48649643)
               

               
               57-460, gnl|canFam2|chr13 (63153874-63154180)
               

               
               57-460, gnl|hg17|chr4 (72239897-72240247)
               

               
               57-460, gnl|Hg17|chr4 (72239939-72240345)
               

               
               57-460, gnl|loxAfr1|scaffold_35805 (13665-13992)
               

               
               57-460, gnl|oryCun1|scaffold_191690 (4283-3956)
               

               
               57-460, gnl|panTro1|chr3 (61504631-61504281)
               

               
               57-460, gnl|rheMac2|chr5 (58616496-58616147)
               


               
               473-684, gnl|bosTau2|chr6 (48649956-48650165)
               

               
               473-684, gnl|Hg17|chr4 (72240636-72240845)

	276-418, - strand, RNAz p=0.999508
	287-403, + strand, RNAz p=0.591733

	57-460, gnl\|bosTau2\|chr6 (48649240-48649643)
	57-460, gnl\|canFam2\|chr13 (63153874-63154180)
	57-460, gnl\|hg17\|chr4 (72239897-72240247)
	57-460, gnl\|Hg17\|chr4 (72239939-72240345)
	57-460, gnl\|loxAfr1\|scaffold_35805 (13665-13992)
	57-460, gnl\|oryCun1\|scaffold_191690 (4283-3956)
	57-460, gnl\|panTro1\|chr3 (61504631-61504281)
	57-460, gnl\|rheMac2\|chr5 (58616496-58616147)

	473-684, gnl\|bosTau2\|chr6 (48649956-48650165)
	473-684, gnl\|Hg17\|chr4 (72240636-72240845)