Ss1.1-Pig3-SRG8017N07.5
|
GCAGGGTAAGGACAAGGAGAAGGAAAGAAATACTGAGAGAGAGGACGAGGCTGAGGAAGG
AGATGAAGCTCAAGTAGAAGCCAGAAGGGAGCCAGAGCATGGCGCCCAGGAAAAGCAAAT
TACTGGCCCTTTCTGCAACTTGCATGCCCCAGCTATCCCAGCCTTTTGTGTGCCTCCACC
AAACCATGCTTTATTCAGCTACAAGGGCCTTGCACTCTTTTGTTTCCCTTGAGTGGAATG
TTCTTCCACTGACTTTTCACCTTGTTGACACCTGTTTGTTCTACCAGCCTCCTTCTAGAA
AGGTTTTTCTGACAGATCAGTGCTGGTCATTTTCCTTTATTGTATGCTCTAATGGAACTG
TCTATGTTCCCTTCCTTCAGAGTATTTATTTCTCTGTAATTGTTCATGAGCTAAGGTGAT
CAGTAATTTCCATCTGTTCTTCTGGATTGTGAAAGCCAGGGATGGTATTATATATTTTTT
CTCTCTGTGGTAGCCTTAACACAGTGTTTTACCTAGAGTAAGCACTCAGTAATTAGTCAC
TAAATTAAGTAATTAAGATTTAGACAGCTCTCTCAGATTTATCACAGGAAAAATAGCAAT
CAAAAACAGAGCCTGAATAATATGTTTTCACCATCCATTCTGATTATCATAGAATGATAG
AGCTGGAAGAAACCCTGAGGGATGATCTCATCCAGAAGAGAAATGAAGGTGAAAAATATA
AATGTAAGAGAGAGTGTGGACCTGTGTTAGTCAGAAGCAGCTAAAAACATTTTTGTGACT
TTGCTATAAAACATTTAAAAATAGATTTTAGGGAAAGTTTTATTTCTAGTAACTAAATTC
ATTAACAGATACTTTTTCTATGAACTCTTCATAGTCAGTAATAAAACAGCTACCACATAT
TTAAAACTGACTTATTTCGTTAATTGGATATTAATATATTCAGCCCCCAATCTAGCTCTA
GGGAAGTAACCTGTCCAAATTCACCCAGTTTTTTAAGTAGTGGAGTCTTGAAATGAATGA
GGTGACTCCAATGGCAAAAATCAGAATGTATCTTAGGTCTGGAACAAGCCTTATTCCAGG
TAACTTGGCTGCCCTGCCTTTAGTCCTTTACTTACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGGGTAAGGACAAGGAGAAGGAAAGAAATACTGAGAGAGAGGACGAGGCTGAGGAAGG
AGATGAAGCTCAAGTAGAAGCCAGAAGGGAGCCAGAGCATGGCGCCCAGGAAAAGCAAAT
TACTGGCCCTTTCTGCAACTTGCATGCCCCAGCTATCCCAGCCTTTTGTGTGCCTCCACC
AAACCATGCTTTATTCAGCTACAAGGGCCTTGCACTCTTTTGTTTCCCTTGAGTGGAATG
TTCTTCCACTGACTTTTCACCTTGTTGACACCTGTTTGTTCTACCAGCCTCCTTCTAGAA
AGGTTTTTCTGACAGATCAGTGCTGGTCATTTTCCTTTATTGTATGCTCTAATGGAACTG
TCTATGTTCCCTTCCTTCAGAGTATTTATTTCTCTGTAATTGTTCATGAGCTAAGGTGAT
CAGTAATTTCCATCTGTTCTTCTGGATTGTGAAAGCCAGGGATGGTATTATATATTTTTT
CTCTCTGTGGTAGCCTTAACACAGTGTTTTACCTAGAGTAAGCACTCAGTAATTAGTCAC
TAAATTAAGTAATTAAGATTTAGACAGCTCTCTCAGATTTATCACAGGAAAAATAGCAAT
CAAAAACAGAGCCTGAATAATATGTTTTCACCATCCATTCTGATTATCATAGAATGATAG
AGCTGGAAGAAACCCTGAGGGATGATCTCATCCAGAAGAGAAATGAAGGTGAAAAATATA
AATGTAAGAGAGAGTGTGGACCTGTGTTAGTCAGAAGCAGCTAAAAACATTTTTGTGACT
TTGCTATAAAACATTTAAAAATAGATTTTAGGGAAAGTTTTATTTCTAGTAACTAAATTC
ATTAACAGATACTTTTTCTATGAACTCTTCATAGTCAGTAATAAAACAGCTACCACATAT
TTAAAACTGACTTATTTCGTTAATTGGATATTAATATATTCAGCCCCCAATCTAGCTCTA
GGGAAGTAACCTGTCCAAATTCACCCAGTTTTTTAAGTAGTGGAGTCTTGAAATGAATGA
GGTGACTCCAATGGCAAAAATCAGAATGTATCTTAGGTCTGGAACAAGCCTTATTCCAGG
TAACTTGGCTGCCCTGCCTTTAGTCCTTTACTTACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-121, gnl|bosTau2|chr3 (7746934-7747054) |
|
1-121, gnl|canFam2|chr38 (24409929-24409769) |
|
1-121, gnl|fr1|chrUn (264476599-264476764) |
|
1-121, gnl|hg17|chr1 (157831496-157831650) |
|
1-121, gnl|Hg17|chr1 (157831664-157831550) |
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1-121, gnl|mm7|chr1 (171378524-171378370) |
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1-121, gnl|Mm7|chr1 (171378354-171378468) |
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1-121, gnl|monDom2|scaffold_0 (28828687-28828452) |
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1-121, gnl|oryCun1|scaffold_208402 (175571-175414) |
|
1-121, gnl|panTro1|chr1 (139897450-139897604) |
|
1-121, gnl|rheMac2|chr1 (139659446-139659603) |
|
1-121, gnl|rn3|chr13 (87522718-87522564) |
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1-121, gnl|xenTro1|scaffold_291 (1293218-1293404) |
| |
|
557-1114, gnl|bosTau2|chr22 (30961983-30961434) |
|
557-1114, gnl|Hg17|chr3 (60466498-60465955) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-121, gnl|bosTau2|chr3 (7746934-7747054) |
|
1-121, gnl|canFam2|chr38 (24409929-24409769) |
|
1-121, gnl|fr1|chrUn (264476599-264476764) |
|
1-121, gnl|hg17|chr1 (157831496-157831650) |
|
1-121, gnl|Hg17|chr1 (157831664-157831550) |
|
1-121, gnl|mm7|chr1 (171378524-171378370) |
|
1-121, gnl|Mm7|chr1 (171378354-171378468) |
|
1-121, gnl|monDom2|scaffold_0 (28828687-28828452) |
|
1-121, gnl|oryCun1|scaffold_208402 (175571-175414) |
|
1-121, gnl|panTro1|chr1 (139897450-139897604) |
|
1-121, gnl|rheMac2|chr1 (139659446-139659603) |
|
1-121, gnl|rn3|chr13 (87522718-87522564) |
|
1-121, gnl|xenTro1|scaffold_291 (1293218-1293404) |
| |
|
557-1114, gnl|bosTau2|chr22 (30961983-30961434) |
|
557-1114, gnl|Hg17|chr3 (60466498-60465955) |
