Non-Coding RNA Search

Ss1.1-Pig3-SRG8018C14.3

Sequence:


               
               ATGTGAAGACCCAGTGGATCATGTTGGAAACACAACAGCATTCCAGGAACTTGGTTATGG
TTGTCTCAAGTTTGGGGGTCAGGCCTACAGAGATGTGGAGCACACTCGCGTGCAGTGCCG
GGCCCTGGATGGAATTGAGTGTGCCAGCCCGAGGACCTTCCTCCGAGAGAACAAACCTTG
TATAAAGTATACCGGACACTACTTCATAACCACTTTGCTCTACTCTTTCTTCCTGGGATG
TTTTGGAGTAGATCGTTTCTGCATGGGACACACTGGCACAGCAGTGGGGAAGCTCTTGAC
TCTTGGAGGACTTGGGATTTGGTGGTTTGTTGACCTTATTTTGCTGATCACTGGAGGACT
GATGCCCAGTGACGGCAGCAATTGGTGCACCATTTACTAAGAAGAGCTGCTGTTGTGGCC
CAGAGAGGCAAGGCTCTTGGATTCATCTCTGCAGGCTCAGAACTCCTCAACATCAGGCCT
GACCAGTATTTTCCCTCGTTGGAGAGAATGGCTTTGGTTAGGAAGGTGGCTTCAGACTGT
GACGTTCGACCCAAATTTGACCTTGCAGACTAGAAATGACAAGCAGACAGTATTGTGGGT
ATCAAGTTTGTACCTTCCCTCATGTACCAAAAATATAAAGGATAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGAAGACCCAGTGGATCATGTTGGAAACACAACAGCATTCCAGGAACTTGGTTATGG
TTGTCTCAAGTTTGGGGGTCAGGCCTACAGAGATGTGGAGCACACTCGCGTGCAGTGCCG
GGCCCTGGATGGAATTGAGTGTGCCAGCCCGAGGACCTTCCTCCGAGAGAACAAACCTTG
TATAAAGTATACCGGACACTACTTCATAACCACTTTGCTCTACTCTTTCTTCCTGGGATG
TTTTGGAGTAGATCGTTTCTGCATGGGACACACTGGCACAGCAGTGGGGAAGCTCTTGAC
TCTTGGAGGACTTGGGATTTGGTGGTTTGTTGACCTTATTTTGCTGATCACTGGAGGACT
GATGCCCAGTGACGGCAGCAATTGGTGCACCATTTACTAAGAAGAGCTGCTGTTGTGGCC
CAGAGAGGCAAGGCTCTTGGATTCATCTCTGCAGGCTCAGAACTCCTCAACATCAGGCCT
GACCAGTATTTTCCCTCGTTGGAGAGAATGGCTTTGGTTAGGAAGGTGGCTTCAGACTGT
GACGTTCGACCCAAATTTGACCTTGCAGACTAGAAATGACAAGCAGACAGTATTGTGGGT
ATCAAGTTTGTACCTTCCCTCATGTACCAAAAATATAAAGGATAGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883541|ref|XP_584603.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883541|ref|XP_584603.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               335-443, + strand, RNAz p=0.599568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-443, + strand, RNAz p=0.599568

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_078473, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_078473, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               176-648, gnl|bosTau2|chr27 (22694345-22693872)
               

               
               176-648, gnl|Hg17|chr8 (38968233-38967748)
               

               
               176-648, gnl|Mm7|chr8 (23776323-23776763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-648, gnl|bosTau2|chr27 (22694345-22693872)
               

               
               176-648, gnl|Hg17|chr8 (38968233-38967748)
               

               
               176-648, gnl|Mm7|chr8 (23776323-23776763)

	176-648, gnl\|bosTau2\|chr27 (22694345-22693872)
	176-648, gnl\|Hg17\|chr8 (38968233-38967748)
	176-648, gnl\|Mm7\|chr8 (23776323-23776763)