Non-Coding RNA Search

Ss1.1-Pig3-SRG8018D13.3

Sequence:


               
               GGTCAAGAGGCCAGGAGGAAGGAGACCAATAACCTGGGGGGCCTGTGCCCCTCACCCTTG
CACCCAGAAATGTGCTAATAGGGCAGCAACACCATCCTGCCACTGGAGGAGGTGTGAACT
GTTAATGATCAAAAAAATTGATGAAAAGGATTTACAAAAGAGCCAATCTTCCTCCTTCTG
CATGACCAGCCAGGAGCTCACTTGGTACAGAGGGGGACCTTCTCTAACTGAGGCACAAGA
AGTTTAATACGGCAGTGAAAACCAGTGAACCAGACAAGTAAACCAGGGAGGCAACTGCAC
CTGATCTTGGGTAGTTATTGAAAAGGCTGTCCTCCTGAGACATTTTGAAGCCTTCTCCCT
GGGTACATTGGAGGATATTAATATTTTAGATTTTAGCTAAATATTTATAGGGGGACAAAG
TTTTACTCAGGAAATCTAGTTAATAATGGATTCCAGCCCTAATAGGGAAGGGCTTTCTGT
GCTAGGCCAGCTGGAAAATGCCTGATTTGATGGAGAGTTTTGGCCTAAGGCCTGGCATAA
AGAAAAAAAAAAAAAAAAAAAAAA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CCAAATGCTCGGGTGTGCGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCAAGAGGCCAGGAGGAAGGAGACCAATAACCTGGGGGGCCTGTGCCCCTCACCCTTG
CACCCAGAAATGTGCTAATAGGGCAGCAACACCATCCTGCCACTGGAGGAGGTGTGAACT
GTTAATGATCAAAAAAATTGATGAAAAGGATTTACAAAAGAGCCAATCTTCCTCCTTCTG
CATGACCAGCCAGGAGCTCACTTGGTACAGAGGGGGACCTTCTCTAACTGAGGCACAAGA
AGTTTAATACGGCAGTGAAAACCAGTGAACCAGACAAGTAAACCAGGGAGGCAACTGCAC
CTGATCTTGGGTAGTTATTGAAAAGGCTGTCCTCCTGAGACATTTTGAAGCCTTCTCCCT
GGGTACATTGGAGGATATTAATATTTTAGATTTTAGCTAAATATTTATAGGGGGACAAAG
TTTTACTCAGGAAATCTAGTTAATAATGGATTCCAGCCCTAATAGGGAAGGGCTTTCTGT
GCTAGGCCAGCTGGAAAATGCCTGATTTGATGGAGAGTTTTGGCCTAAGGCCTGGCATAA
AGAAAAAAAAAAAAAAAAAAAAAA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CCAAATGCTCGGGTGTGCGCCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               120-238, - strand, RNAz p=0.743064
               

               
               429-547, + strand, RNAz p=0.843403

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.743064
               

               
               429-547, + strand, RNAz p=0.843403

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-547, gnl|bosTau2|chr22 (37742833-37742290)
               

               
               1-547, gnl|Mm7|chr9 (108135447-108135913)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-547, gnl|bosTau2|chr22 (37742833-37742290)
               

               
               1-547, gnl|Mm7|chr9 (108135447-108135913)

	120-238, - strand, RNAz p=0.743064
	429-547, + strand, RNAz p=0.843403

	1-547, gnl\|bosTau2\|chr22 (37742833-37742290)
	1-547, gnl\|Mm7\|chr9 (108135447-108135913)