Non-Coding RNA Search

Ss1.1-Pig3-SRG8018E21.5

Sequence:


               
               CTCAGCCCTCACAGGTGGGGACTTTATTTTTAGCCCCAATCTTCAGGTGGTGACAGATAC
TGAGAAGGCACAGACATCTGCCCAAGTCATCCAGCTGAGCAACTAAGGGGAGACCTGAAC
CCAGAGCCTCTGCCCCTAACTTCTAGAAGATGCCAAGCTGCTCAATGGAGGAGGAAGAGA
CAGGATTCTAATCCAGCTTCTCCCCACTACAGCCCTGATATTTTCCTGGCTATACCCCCG
CCCGCCAGCAGTGTGGGTGCCTCAGGCCAGGACATCTCCTGGCGCTTCGACACCCCAAGT
GTCTTTTTCACAGATCTGTTGTGAGGATGAAATGTGTTGATAAATGTCAAGGACTTAAGA
CAGCGCCTGACGCATGGTAAATGCAAGAAACGTTGGCTATGGTTGCTGTTTTCGCATGAT
GATGGATCTCTCAATTTTTGGCCAGGCATATGGGTGCTCAGAATGAAAGCTGCATTTTCC
AGCTCCCACTGCAGATAGGTGTGGCCGTCTGAATAAGTGCTGGCCCCTGAGATATAAGGG
GAAGCATCTTGTGGCCACTTCAGGGATTATTGATGGGTATTACCCACCGTGTCCCTTTCT
CCATCTGGCTGCCGAGAATGTGGATGCCAACCATCCAGGACCACGTGGTGAAGGTCATCA
GAGCAGAGCAACAAGAGAGAAAGAGCCTGGGTCCCTGCCTATGAACGGCACAGTCCCTGT
CCTCAAACGCCCACCCAGACTGCTGAGCAAGAGAGAAATAAATTCTGTTTTATTTAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGCCCTCACAGGTGGGGACTTTATTTTTAGCCCCAATCTTCAGGTGGTGACAGATAC
TGAGAAGGCACAGACATCTGCCCAAGTCATCCAGCTGAGCAACTAAGGGGAGACCTGAAC
CCAGAGCCTCTGCCCCTAACTTCTAGAAGATGCCAAGCTGCTCAATGGAGGAGGAAGAGA
CAGGATTCTAATCCAGCTTCTCCCCACTACAGCCCTGATATTTTCCTGGCTATACCCCCG
CCCGCCAGCAGTGTGGGTGCCTCAGGCCAGGACATCTCCTGGCGCTTCGACACCCCAAGT
GTCTTTTTCACAGATCTGTTGTGAGGATGAAATGTGTTGATAAATGTCAAGGACTTAAGA
CAGCGCCTGACGCATGGTAAATGCAAGAAACGTTGGCTATGGTTGCTGTTTTCGCATGAT
GATGGATCTCTCAATTTTTGGCCAGGCATATGGGTGCTCAGAATGAAAGCTGCATTTTCC
AGCTCCCACTGCAGATAGGTGTGGCCGTCTGAATAAGTGCTGGCCCCTGAGATATAAGGG
GAAGCATCTTGTGGCCACTTCAGGGATTATTGATGGGTATTACCCACCGTGTCCCTTTCT
CCATCTGGCTGCCGAGAATGTGGATGCCAACCATCCAGGACCACGTGGTGAAGGTCATCA
GAGCAGAGCAACAAGAGAGAAAGAGCCTGGGTCCCTGCCTATGAACGGCACAGTCCCTGT
CCTCAAACGCCCACCCAGACTGCTGAGCAAGAGAGAAATAAATTCTGTTTTATTTAACAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               181-299, + strand, RNAz p=0.838002

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-299, + strand, RNAz p=0.838002

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-299, gnl|bosTau2|chr20 (3174983-3174689)
               

               
               1-299, gnl|canFam2|chr4 (42730316-42729206)
               

               
               1-299, gnl|hg17|chr5 (172194722-172195855)
               

               
               1-299, gnl|Hg17|chr5 (172195072-172194787)
               

               
               1-299, gnl|loxAfr1|scaffold_79287 (3317-4350)
               

               
               1-299, gnl|mm7|chr17 (24746739-24747738)
               

               
               1-299, gnl|Mm7|chr17 (24747046-24746801)
               

               
               1-299, gnl|oryCun1|scaffold_178465 (37620-38872)
               

               
               1-299, gnl|panTro1|chr4 (179519242-179520375)
               

               
               1-299, gnl|rheMac2|chr6 (169233130-169234247)
               

               
               1-299, gnl|rn3|chr10 (16889924-16888960)
               


               
               309-772, gnl|bosTau2|chr20 (3171643-3171183)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-299, gnl|bosTau2|chr20 (3174983-3174689)
               

               
               1-299, gnl|canFam2|chr4 (42730316-42729206)
               

               
               1-299, gnl|hg17|chr5 (172194722-172195855)
               

               
               1-299, gnl|Hg17|chr5 (172195072-172194787)
               

               
               1-299, gnl|loxAfr1|scaffold_79287 (3317-4350)
               

               
               1-299, gnl|mm7|chr17 (24746739-24747738)
               

               
               1-299, gnl|Mm7|chr17 (24747046-24746801)
               

               
               1-299, gnl|oryCun1|scaffold_178465 (37620-38872)
               

               
               1-299, gnl|panTro1|chr4 (179519242-179520375)
               

               
               1-299, gnl|rheMac2|chr6 (169233130-169234247)
               

               
               1-299, gnl|rn3|chr10 (16889924-16888960)
               


               
               309-772, gnl|bosTau2|chr20 (3171643-3171183)

	1-299, gnl\|bosTau2\|chr20 (3174983-3174689)
	1-299, gnl\|canFam2\|chr4 (42730316-42729206)
	1-299, gnl\|hg17\|chr5 (172194722-172195855)
	1-299, gnl\|Hg17\|chr5 (172195072-172194787)
	1-299, gnl\|loxAfr1\|scaffold_79287 (3317-4350)
	1-299, gnl\|mm7\|chr17 (24746739-24747738)
	1-299, gnl\|Mm7\|chr17 (24747046-24746801)
	1-299, gnl\|oryCun1\|scaffold_178465 (37620-38872)
	1-299, gnl\|panTro1\|chr4 (179519242-179520375)
	1-299, gnl\|rheMac2\|chr6 (169233130-169234247)
	1-299, gnl\|rn3\|chr10 (16889924-16888960)

	309-772, gnl\|bosTau2\|chr20 (3171643-3171183)