Non-Coding RNA Search

Ss1.1-Pig3-SRG8018F06.3

Sequence:


               
               GCTCTTGTTCCTCATAAAAACCCTGCCCACTGTTAACTTCATAAAACAGCTCCTCATGGT
TGGCTGTGAAGCTGGGCTGCTGCTAAATTTCCAGTTCATTTAACTCTTTGGGTCTCATGG
GCTCAGCTCTCCCAGGTACTGGCATTGGCTCCTTGCCACCAGGGGTTCATGGGAGGCAGT
GCAAACATCCCATAAAGCCTGGAATGCCAGAGCCACAAGATAGGACATGGGTCCACATGC
TCAGCCAGGAGGTAAATGCGTGGATGATAACTGCTGTCTTCTCCCCATCACTGGTTTGGC
AGCCTCCAGGGAGACTCTGTATTGTTTTTTTTAACATCTTGTCCTTGTCACTAATATGCT
CAACACAGCCTCCAAAACGCAAACATGCTGGGAACCTTCAGAGCTGGAAGGGACTATGAG
GATCATCTGACCCATGCCTCTCATCTCATACTCCAGGAAACTGAGGCCCAGAACGCTTAG
GCAACTCGCCCATGTTCATGCAGCTAATTAGTAACAGAGCTGACATCTGGCATAGGCTTT
TCCATTTTTCTCTCCCCAAATAAAGACTAAGAGAAATGGTGTTTATGGAACATCTACTAC
TTTCCAGATACTGTGCTAGGAGCTTTCCATCTATTACTTGTTAAATCCTCACCACATCCT
GACTCAAGTTTAACCATGTTACAGGTGGGAGACTGGAGGCCCAGAAAGGTTAAATAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTTGTTCCTCATAAAAACCCTGCCCACTGTTAACTTCATAAAACAGCTCCTCATGGT
TGGCTGTGAAGCTGGGCTGCTGCTAAATTTCCAGTTCATTTAACTCTTTGGGTCTCATGG
GCTCAGCTCTCCCAGGTACTGGCATTGGCTCCTTGCCACCAGGGGTTCATGGGAGGCAGT
GCAAACATCCCATAAAGCCTGGAATGCCAGAGCCACAAGATAGGACATGGGTCCACATGC
TCAGCCAGGAGGTAAATGCGTGGATGATAACTGCTGTCTTCTCCCCATCACTGGTTTGGC
AGCCTCCAGGGAGACTCTGTATTGTTTTTTTTAACATCTTGTCCTTGTCACTAATATGCT
CAACACAGCCTCCAAAACGCAAACATGCTGGGAACCTTCAGAGCTGGAAGGGACTATGAG
GATCATCTGACCCATGCCTCTCATCTCATACTCCAGGAAACTGAGGCCCAGAACGCTTAG
GCAACTCGCCCATGTTCATGCAGCTAATTAGTAACAGAGCTGACATCTGGCATAGGCTTT
TCCATTTTTCTCTCCCCAAATAAAGACTAAGAGAAATGGTGTTTATGGAACATCTACTAC
TTTCCAGATACTGTGCTAGGAGCTTTCCATCTATTACTTGTTAAATCCTCACCACATCCT
GACTCAAGTTTAACCATGTTACAGGTGGGAGACTGGAGGCCCAGAAAGGTTAAATAACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               107-216, - strand, RNAz p=0.9192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-216, - strand, RNAz p=0.9192

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-326, gnl|bosTau2|chr16 (44938548-44938224)
               

               
               1-326, gnl|canFam2|chr7 (27096399-27095893)
               

               
               1-326, gnl|echTel1|scaffold_291942 (39617-40128)
               

               
               1-326, gnl|hg17|chr1 (172017964-172018509)
               

               
               1-326, gnl|Hg17|chr1 (172018625-172018258)
               

               
               1-326, gnl|loxAfr1|scaffold_1013 (148283-148772)
               

               
               1-326, gnl|mm7|chr1 (159891955-159891454)
               

               
               1-326, gnl|Mm7|chr1 (159891346-159891691)
               

               
               1-326, gnl|oryCun1|scaffold_206247 (8410-8912)
               

               
               1-326, gnl|panTro1|chr1 (154417402-154417947)
               

               
               1-326, gnl|rheMac2|chr1 (204916400-204916945)
               

               
               1-326, gnl|rn3|chr13 (75364627-75364122)
               


               
               333-720, gnl|bosTau2|chr16 (44938239-44937848)
               

               
               333-720, gnl|Hg17|chr1 (172018273-172017853)
               

               
               333-720, gnl|Mm7|chr1 (159891658-159892064)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-326, gnl|bosTau2|chr16 (44938548-44938224)
               

               
               1-326, gnl|canFam2|chr7 (27096399-27095893)
               

               
               1-326, gnl|echTel1|scaffold_291942 (39617-40128)
               

               
               1-326, gnl|hg17|chr1 (172017964-172018509)
               

               
               1-326, gnl|Hg17|chr1 (172018625-172018258)
               

               
               1-326, gnl|loxAfr1|scaffold_1013 (148283-148772)
               

               
               1-326, gnl|mm7|chr1 (159891955-159891454)
               

               
               1-326, gnl|Mm7|chr1 (159891346-159891691)
               

               
               1-326, gnl|oryCun1|scaffold_206247 (8410-8912)
               

               
               1-326, gnl|panTro1|chr1 (154417402-154417947)
               

               
               1-326, gnl|rheMac2|chr1 (204916400-204916945)
               

               
               1-326, gnl|rn3|chr13 (75364627-75364122)
               


               
               333-720, gnl|bosTau2|chr16 (44938239-44937848)
               

               
               333-720, gnl|Hg17|chr1 (172018273-172017853)
               

               
               333-720, gnl|Mm7|chr1 (159891658-159892064)

	1-326, gnl\|bosTau2\|chr16 (44938548-44938224)
	1-326, gnl\|canFam2\|chr7 (27096399-27095893)
	1-326, gnl\|echTel1\|scaffold_291942 (39617-40128)
	1-326, gnl\|hg17\|chr1 (172017964-172018509)
	1-326, gnl\|Hg17\|chr1 (172018625-172018258)
	1-326, gnl\|loxAfr1\|scaffold_1013 (148283-148772)
	1-326, gnl\|mm7\|chr1 (159891955-159891454)
	1-326, gnl\|Mm7\|chr1 (159891346-159891691)
	1-326, gnl\|oryCun1\|scaffold_206247 (8410-8912)
	1-326, gnl\|panTro1\|chr1 (154417402-154417947)
	1-326, gnl\|rheMac2\|chr1 (204916400-204916945)
	1-326, gnl\|rn3\|chr13 (75364627-75364122)

	333-720, gnl\|bosTau2\|chr16 (44938239-44937848)
	333-720, gnl\|Hg17\|chr1 (172018273-172017853)
	333-720, gnl\|Mm7\|chr1 (159891658-159892064)