Non-Coding RNA Search

Ss1.1-Pig3-SRG8018J20.3

Sequence:


               
               CGGCGGGGAATCAAGGGGAGGAAGGAAAGACTGAACGGGAACCTGTGGGCGTGGCAGCCC
CCTCGGGCGATCATCAGCCTAATGCTTCCAAAGACAGCGTGGACGAAGTAGACGGTTCAA
TAAGTGGGCCTAAACCACACGTGCTTTCGGGGGAGCATCCGAGCGCAGAACTTATAAAGG
ATCGGCTTCTTAAACTTCAAAATCAGACCAGGTTCTCCTCTCCAGATGACATGGGCTTGC
CAGGAGACCTGGAAAAAAAGCGGCCCGTTCTGGAAAGAAAGCTTTCCTGGCAACAAGGAG
GTGTGGCTGCCGCAGTTAATAAGCAAGTGAGCGAAAAGAGAGAGCTCCCTGAAGAAGAGG
TCACCAGGGTCACCAAGGATGCCTCAGATGAAGGGCAGGAAGTAAGAAAAACAGGCCAAA
CTGATAGCATAGAAGGGCGAGGCTTCCGCCCAAAAGAACCAAACCCAGAAGATGAAGATT
ACAGCCCTGAAGAACTCCTGGAGGATGAAAATGCTGTAAGTGCAAAGCAGTCTAAAGAAA
GAAGCCCTGAGATTCAGGATAAGAGGTTAGATGTTGACCTGCAAAACCCTGAAAAACCTG
TTTCAGGTGCCATTAAGACTGATCCAGAAACTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGGGAATCAAGGGGAGGAAGGAAAGACTGAACGGGAACCTGTGGGCGTGGCAGCCC
CCTCGGGCGATCATCAGCCTAATGCTTCCAAAGACAGCGTGGACGAAGTAGACGGTTCAA
TAAGTGGGCCTAAACCACACGTGCTTTCGGGGGAGCATCCGAGCGCAGAACTTATAAAGG
ATCGGCTTCTTAAACTTCAAAATCAGACCAGGTTCTCCTCTCCAGATGACATGGGCTTGC
CAGGAGACCTGGAAAAAAAGCGGCCCGTTCTGGAAAGAAAGCTTTCCTGGCAACAAGGAG
GTGTGGCTGCCGCAGTTAATAAGCAAGTGAGCGAAAAGAGAGAGCTCCCTGAAGAAGAGG
TCACCAGGGTCACCAAGGATGCCTCAGATGAAGGGCAGGAAGTAAGAAAAACAGGCCAAA
CTGATAGCATAGAAGGGCGAGGCTTCCGCCCAAAAGAACCAAACCCAGAAGATGAAGATT
ACAGCCCTGAAGAACTCCTGGAGGATGAAAATGCTGTAAGTGCAAAGCAGTCTAAAGAAA
GAAGCCCTGAGATTCAGGATAAGAGGTTAGATGTTGACCTGCAAAACCCTGAAAAACCTG
TTTCAGGTGCCATTAAGACTGATCCAGAAACTAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               200-356, + strand, RNAz p=0.882
               

               
               215-347, - strand, RNAz p=0.868047
               

               
               461-636, - strand, RNAz p=0.964258

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-356, + strand, RNAz p=0.882
               

               
               215-347, - strand, RNAz p=0.868047
               

               
               461-636, - strand, RNAz p=0.964258

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               186-297, - strand, RNAmicro p=0.99969

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               186-297, - strand, RNAmicro p=0.99969

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-636, gnl|bosTau2|chr16 (13389106-13388471)
               

               
               1-636, gnl|canFam2|chr38 (19890861-19891346)
               

               
               1-636, gnl|canFam2|chr38 (19890861-19891346)
               

               
               1-636, gnl|echTel1|scaffold_292606 (111945-111478)
               

               
               1-636, gnl|echTel1|scaffold_292606 (111945-111478)
               

               
               1-636, gnl|galGal2|chr3 (14385764-14385188)
               

               
               1-636, gnl|galGal2|chr3 (14385764-14385188)
               

               
               1-636, gnl|hg17|chr1 (219190553-219191038)
               

               
               1-636, gnl|Hg17|chr1 (219190642-219191286)
               

               
               1-636, gnl|hg17|chr1_random (2193832-2194317)
               

               
               1-636, gnl|mm7|chrUn_random (7866001-7865546)
               

               
               1-636, gnl|mm7|chrUn_random (7866001-7865546)
               

               
               1-636, gnl|Mm7|chrUn_random (7865913-7865293)
               

               
               1-636, gnl|monDom2|scaffold_13 (29369255-29369782)
               

               
               1-636, gnl|monDom2|scaffold_13 (29369255-29369782)
               

               
               1-636, gnl|panTro1|chr1 (203047862-203048347)
               

               
               1-636, gnl|panTro1|chr1 (203047862-203048347)
               

               
               1-636, gnl|rheMac2|chr1 (147644416-147643931)
               

               
               1-636, gnl|rheMac2|chr1 (147644416-147643931)
               

               
               1-636, gnl|xenTro1|scaffold_759 (262823-262349)
               

               
               1-636, gnl|xenTro1|scaffold_759 (262823-262349)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr16 (13389106-13388471)
               

               
               1-636, gnl|canFam2|chr38 (19890861-19891346)
               

               
               1-636, gnl|canFam2|chr38 (19890861-19891346)
               

               
               1-636, gnl|echTel1|scaffold_292606 (111945-111478)
               

               
               1-636, gnl|echTel1|scaffold_292606 (111945-111478)
               

               
               1-636, gnl|galGal2|chr3 (14385764-14385188)
               

               
               1-636, gnl|galGal2|chr3 (14385764-14385188)
               

               
               1-636, gnl|hg17|chr1 (219190553-219191038)
               

               
               1-636, gnl|Hg17|chr1 (219190642-219191286)
               

               
               1-636, gnl|hg17|chr1_random (2193832-2194317)
               

               
               1-636, gnl|mm7|chrUn_random (7866001-7865546)
               

               
               1-636, gnl|mm7|chrUn_random (7866001-7865546)
               

               
               1-636, gnl|Mm7|chrUn_random (7865913-7865293)
               

               
               1-636, gnl|monDom2|scaffold_13 (29369255-29369782)
               

               
               1-636, gnl|monDom2|scaffold_13 (29369255-29369782)
               

               
               1-636, gnl|panTro1|chr1 (203047862-203048347)
               

               
               1-636, gnl|panTro1|chr1 (203047862-203048347)
               

               
               1-636, gnl|rheMac2|chr1 (147644416-147643931)
               

               
               1-636, gnl|rheMac2|chr1 (147644416-147643931)
               

               
               1-636, gnl|xenTro1|scaffold_759 (262823-262349)
               

               
               1-636, gnl|xenTro1|scaffold_759 (262823-262349)

	200-356, + strand, RNAz p=0.882
	215-347, - strand, RNAz p=0.868047
	461-636, - strand, RNAz p=0.964258

	1-636, gnl\|bosTau2\|chr16 (13389106-13388471)
	1-636, gnl\|canFam2\|chr38 (19890861-19891346)
	1-636, gnl\|canFam2\|chr38 (19890861-19891346)
	1-636, gnl\|echTel1\|scaffold_292606 (111945-111478)
	1-636, gnl\|echTel1\|scaffold_292606 (111945-111478)
	1-636, gnl\|galGal2\|chr3 (14385764-14385188)
	1-636, gnl\|galGal2\|chr3 (14385764-14385188)
	1-636, gnl\|hg17\|chr1 (219190553-219191038)
	1-636, gnl\|Hg17\|chr1 (219190642-219191286)
	1-636, gnl\|hg17\|chr1_random (2193832-2194317)
	1-636, gnl\|mm7\|chrUn_random (7866001-7865546)
	1-636, gnl\|mm7\|chrUn_random (7866001-7865546)
	1-636, gnl\|Mm7\|chrUn_random (7865913-7865293)
	1-636, gnl\|monDom2\|scaffold_13 (29369255-29369782)
	1-636, gnl\|monDom2\|scaffold_13 (29369255-29369782)
	1-636, gnl\|panTro1\|chr1 (203047862-203048347)
	1-636, gnl\|panTro1\|chr1 (203047862-203048347)
	1-636, gnl\|rheMac2\|chr1 (147644416-147643931)
	1-636, gnl\|rheMac2\|chr1 (147644416-147643931)
	1-636, gnl\|xenTro1\|scaffold_759 (262823-262349)
	1-636, gnl\|xenTro1\|scaffold_759 (262823-262349)