Ss1.1-Pig3-SRG8018K13.5
|
CAGCCCCTCATTCCTTCTTTGCTTCTGTTTCCTACTCGCAACTCTTTCAGCTTATTCTTT
TGGTGTTTGCCACTGTATCTTGCCATAATTTGCTTATGCTGCTGCTATTTAGTTGTTTAT
TAAGTTTAGGCATCATCTCTTGATTCCCCACTTTGAAAGATGAAAGTGCAACACTGTGCA
TCCCTTTCTGTGCTTTTCCTCAGCTCATCCAGGAGTTTCTACCCTCTTCACTCCCAATAG
ATTAAAATCATAATTTTGGTTAGGTCAGTATATTTATTTTCAAATATTATATATTTATGT
AATTACTCCTCTATAAATGCTTTTTATCTTAATATAAAACTTCATCATAATCCAAAGTTT
CACATAATATAATGATTATTTTAAGAGCCTTTTTGTGTCTTTCATTCATAGACATTCAGC
AAAACAACTCTATTCTTATAGATAAGGAACAGAGATCTGGTTTTATGGTTGCTATTCCTT
AATGTATAAATTGGGCAGATAATCTTTTAATCTTTAAGTGATTGGTTGAAATTACATTCA
CTTCAATTTCAAGTTAGAGCCTTTAGTTAACGAATTGATTATTCTTACCAAAAAGTAAAT
ATATAAGGCCTTTAGTTTTGCTAAATGTTTGTCAAACCATGTTATTTATTCCTAGTGTGT
CATAACTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGTAAAGTCATTCA
TTATGGTGCTCNTAAGGAGATAGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGA
TGGACTTCAAAGTTCTTGTCACATTCTCTGGGCTCCAGCAGACATTAACTTAAATAGGCA
CCTCCTTAGTGAGATATGCAATGAAAACTTTCGATTATACAAATTAAAGATGATGGCGAA
GATGGAAAAATATCTTCATTCCAGCAGGTGTAGACGACAAATCATCTTGTCTCATTTTGA
AGACAAACAGCTACGAAAGGCCTCCTTGGGAATTATGGGAACTGAAAAATGCTGTGATAA
TTGCAGGTCCAGATTGGATCACTGCTTTTCCACTGAAGATTCAGAGGATATGTCACAGGA
CTTTGGTCCACAAGCATTCCAGCTCTTATCTGCTGTGACCATCTTAGGAGAAAAGTTTGG
AATTGGGCTTCCGATTTTATTTCTCCGGGGATCTGTAAGTATGTCTGTGAATCACCTTCT
GAGTTCTTCTTTTACTCCTATTACACTTTTCTTTTGAGGTTTGTTATATTGCACTTATAG
CTTTGGCTTTAGTTGAGTTACTAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGCCCCTCATTCCTTCTTTGCTTCTGTTTCCTACTCGCAACTCTTTCAGCTTATTCTTT
TGGTGTTTGCCACTGTATCTTGCCATAATTTGCTTATGCTGCTGCTATTTAGTTGTTTAT
TAAGTTTAGGCATCATCTCTTGATTCCCCACTTTGAAAGATGAAAGTGCAACACTGTGCA
TCCCTTTCTGTGCTTTTCCTCAGCTCATCCAGGAGTTTCTACCCTCTTCACTCCCAATAG
ATTAAAATCATAATTTTGGTTAGGTCAGTATATTTATTTTCAAATATTATATATTTATGT
AATTACTCCTCTATAAATGCTTTTTATCTTAATATAAAACTTCATCATAATCCAAAGTTT
CACATAATATAATGATTATTTTAAGAGCCTTTTTGTGTCTTTCATTCATAGACATTCAGC
AAAACAACTCTATTCTTATAGATAAGGAACAGAGATCTGGTTTTATGGTTGCTATTCCTT
AATGTATAAATTGGGCAGATAATCTTTTAATCTTTAAGTGATTGGTTGAAATTACATTCA
CTTCAATTTCAAGTTAGAGCCTTTAGTTAACGAATTGATTATTCTTACCAAAAAGTAAAT
ATATAAGGCCTTTAGTTTTGCTAAATGTTTGTCAAACCATGTTATTTATTCCTAGTGTGT
CATAACTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGTAAAGTCATTCA
TTATGGTGCTCNTAAGGAGATAGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGA
TGGACTTCAAAGTTCTTGTCACATTCTCTGGGCTCCAGCAGACATTAACTTAAATAGGCA
CCTCCTTAGTGAGATATGCAATGAAAACTTTCGATTATACAAATTAAAGATGATGGCGAA
GATGGAAAAATATCTTCATTCCAGCAGGTGTAGACGACAAATCATCTTGTCTCATTTTGA
AGACAAACAGCTACGAAAGGCCTCCTTGGGAATTATGGGAACTGAAAAATGCTGTGATAA
TTGCAGGTCCAGATTGGATCACTGCTTTTCCACTGAAGATTCAGAGGATATGTCACAGGA
CTTTGGTCCACAAGCATTCCAGCTCTTATCTGCTGTGACCATCTTAGGAGAAAAGTTTGG
AATTGGGCTTCCGATTTTATTTCTCCGGGGATCTGTAAGTATGTCTGTGAATCACCTTCT
GAGTTCTTCTTTTACTCCTATTACACTTTTCTTTTGAGGTTTGTTATATTGCACTTATAG
CTTTGGCTTTAGTTGAGTTACTAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
8-327, gnl|bosTau2|chr27 (14002640-14002325) |
|
8-327, gnl|canFam2|chr16 (36170192-36169661) |
|
8-327, gnl|echTel1|scaffold_248344 (473-1126) |
|
8-327, gnl|hg17|chr8 (31096321-31096868) |
|
8-327, gnl|Hg17|chr8 (31096357-31096678) |
|
8-327, gnl|loxAfr1|scaffold_30406 (33789-33255) |
|
8-327, gnl|mm7|chr8 (32057869-32057410) |
|
8-327, gnl|Mm7|chr8 (32057846-32057588) |
|
8-327, gnl|panTro1|chr7 (32187371-32187918) |
|
8-327, gnl|rheMac2|chr8 (31379479-31380024) |
|
8-327, gnl|rn3|chr16 (62619324-62619779) |
| |
|
536-838, gnl|bosTau2|chr27 (14001042-14000748) |
|
536-838, gnl|Hg17|chr8 (31097187-31097483) |
| |
|
1031-1211, gnl|bosTau2|chr27 (13988078-13987904) |
|
1031-1211, gnl|Hg17|chr8 (31109421-31109625) |
|
1031-1211, gnl|Mm7|chr8 (32048784-32048605) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
8-327, gnl|bosTau2|chr27 (14002640-14002325) |
|
8-327, gnl|canFam2|chr16 (36170192-36169661) |
|
8-327, gnl|echTel1|scaffold_248344 (473-1126) |
|
8-327, gnl|hg17|chr8 (31096321-31096868) |
|
8-327, gnl|Hg17|chr8 (31096357-31096678) |
|
8-327, gnl|loxAfr1|scaffold_30406 (33789-33255) |
|
8-327, gnl|mm7|chr8 (32057869-32057410) |
|
8-327, gnl|Mm7|chr8 (32057846-32057588) |
|
8-327, gnl|panTro1|chr7 (32187371-32187918) |
|
8-327, gnl|rheMac2|chr8 (31379479-31380024) |
|
8-327, gnl|rn3|chr16 (62619324-62619779) |
| |
|
536-838, gnl|bosTau2|chr27 (14001042-14000748) |
|
536-838, gnl|Hg17|chr8 (31097187-31097483) |
| |
|
1031-1211, gnl|bosTau2|chr27 (13988078-13987904) |
|
1031-1211, gnl|Hg17|chr8 (31109421-31109625) |
|
1031-1211, gnl|Mm7|chr8 (32048784-32048605) |
