Non-Coding RNA Search

Ss1.1-Pig3-SRG8018L10.3

Sequence:


               
               TGTGTGACTTTTTCACTCATAAGGTTTCATCTTATGATTCTTACATTGAGCAATGGTTTT
TGCTGTAGGTAATGGAGACAACTTATTCTCTCTATCCTGCTCCAAATGTTATTGAAAACT
CACAATGTGCAGAGCATTATTCCAGAGAACAGCAAGAGATGAAACTACAAAGCGATATGA
GCAATGCATCAGATTTAGAGCCAGGTCTGTAATGACATAAATGGGTCAAGAGCATGACCT
TGGGTGTCTGACAGGCTGAGTTCCTACAATGGCCTTTCTACCATGTAGTTGCGGGACTTT
GGGTGGGCCATTAATTTAAACGTCAGAACTACTGAGGTACAGCCTCAAACCTGTCAGAAT
GGCCATCATTAACAAGTCAACAAATAACAAATGCTGGAGAGCCTGTGGAGAAAAGGGAAG
CCTCCCACACTCTTGGTGAGAATGTAAATTGGTACAACCTCTATGGAAAACAGTAGGAAG
GTACCTTAGAAAACTATACATAGATCTACCATATGACCCAGCAATCCCACTCTTGGGCAT
ATATCCAGACAAAATTTTCCTTGAAAAATATACATGCACCTGTATGTTCATTGCAGCATT
ATTCACAATAGCTAAGATTTGGAAAAAACCTAAATGTCCGTCAACAGATGAATGGATTAA
GAAAGACGTGTATATATACATAATGGAATACTACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGACTTTTTCACTCATAAGGTTTCATCTTATGATTCTTACATTGAGCAATGGTTTT
TGCTGTAGGTAATGGAGACAACTTATTCTCTCTATCCTGCTCCAAATGTTATTGAAAACT
CACAATGTGCAGAGCATTATTCCAGAGAACAGCAAGAGATGAAACTACAAAGCGATATGA
GCAATGCATCAGATTTAGAGCCAGGTCTGTAATGACATAAATGGGTCAAGAGCATGACCT
TGGGTGTCTGACAGGCTGAGTTCCTACAATGGCCTTTCTACCATGTAGTTGCGGGACTTT
GGGTGGGCCATTAATTTAAACGTCAGAACTACTGAGGTACAGCCTCAAACCTGTCAGAAT
GGCCATCATTAACAAGTCAACAAATAACAAATGCTGGAGAGCCTGTGGAGAAAAGGGAAG
CCTCCCACACTCTTGGTGAGAATGTAAATTGGTACAACCTCTATGGAAAACAGTAGGAAG
GTACCTTAGAAAACTATACATAGATCTACCATATGACCCAGCAATCCCACTCTTGGGCAT
ATATCCAGACAAAATTTTCCTTGAAAAATATACATGCACCTGTATGTTCATTGCAGCATT
ATTCACAATAGCTAAGATTTGGAAAAAACCTAAATGTCCGTCAACAGATGAATGGATTAA
GAAAGACGTGTATATATACATAATGGAATACTACTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57042816|ref|XP_535244.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57042816|ref|XP_535244.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-635, - strand, RNAz p=0.966972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-635, - strand, RNAz p=0.966972

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               320-696, gnl|bosTau2|chr10 (22528546-22528168)
               


               
               333-692, gnl|bosTau2|chr10 (20551902-20552261)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               320-696, gnl|bosTau2|chr10 (22528546-22528168)
               


               
               333-692, gnl|bosTau2|chr10 (20551902-20552261)

	320-696, gnl\|bosTau2\|chr10 (22528546-22528168)

	333-692, gnl\|bosTau2\|chr10 (20551902-20552261)