Non-Coding RNA Search

Ss1.1-Pig3-SRG8018O16.3

Sequence:


               
               GGCACTTGCAGCTGGGAGCTCTCCTCTGGGCTGGCTGATCAAAGAGCAGGAAGCAGCGAT
GTCTGCTGTGGGTTCTGCAGCTCCATACCTGCATCACCCTGCTGACAGTCACAGTGGCCG
GGTGAGTTTCCTGGGGACCCATCTGCCCCCATAGGTGGCATCCATGCTGCGGCTCCTGGG
AGACCTGGACAGGGGCACGTTCATAAGATTGTTGAAGCTGGTGGTCATCAGCCTGCATGG
AGAATACTGCCGCGAGGCTGTGCAACGCCTCATGGCTGGTGCATACCTGCCTGATGAGCG
ACTGGGTGCCCTGATTGCTGGCATACACACCCTGCTCCATCATGCCCTCCGGCTGCCCCC
GGCCAGCTTGAAGCCTGATGCCTTCAAGAACCAGCTCCAGGAGCTCTGCATCCCCCATGA
CCTGGTTGTGGACTTGGCCAGTGTGGTGTTTGGGAGCCAGCGGCCTCTCCTTGACTCTGT
GGCCAGGCAGCAAGGAGCCTGGCTGCCCCACGTTGTCGACTTTAGGTGGAGGGTGGACGT
GGCCATCTCCACCAGCGCCCTGACCCGCTCCTTGCAGCCGAGCGTCATGATGCAGCTGAA
GCTTTCGGATGGATCCGCACACCTCTTCGAGGTCCCCACGGCCAAGTTCCAGGAGATGAG
GTTCGCCGTGGCCCTGCTCATGAAAGAGATGGCCGACATGGAGAAGAGATGCGAGCGCAA
ACTGCAGGAATAACCCTCCCCCGCCAGTCCCCTTCTGGTCACCCCGGGGACAGCTGGCTC
AGACGCTGTCTCCAGAACGAAGCCCGGCCCCCACCCTCAGGAGGCCCTCCAGTGAGAGCG
TTGGGTGAAACCACATCATTCTATAAATGGAGGACATTCTTTTTTTTGGAAGTAAAGCGA
CTATGAAAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACTTGCAGCTGGGAGCTCTCCTCTGGGCTGGCTGATCAAAGAGCAGGAAGCAGCGAT
GTCTGCTGTGGGTTCTGCAGCTCCATACCTGCATCACCCTGCTGACAGTCACAGTGGCCG
GGTGAGTTTCCTGGGGACCCATCTGCCCCCATAGGTGGCATCCATGCTGCGGCTCCTGGG
AGACCTGGACAGGGGCACGTTCATAAGATTGTTGAAGCTGGTGGTCATCAGCCTGCATGG
AGAATACTGCCGCGAGGCTGTGCAACGCCTCATGGCTGGTGCATACCTGCCTGATGAGCG
ACTGGGTGCCCTGATTGCTGGCATACACACCCTGCTCCATCATGCCCTCCGGCTGCCCCC
GGCCAGCTTGAAGCCTGATGCCTTCAAGAACCAGCTCCAGGAGCTCTGCATCCCCCATGA
CCTGGTTGTGGACTTGGCCAGTGTGGTGTTTGGGAGCCAGCGGCCTCTCCTTGACTCTGT
GGCCAGGCAGCAAGGAGCCTGGCTGCCCCACGTTGTCGACTTTAGGTGGAGGGTGGACGT
GGCCATCTCCACCAGCGCCCTGACCCGCTCCTTGCAGCCGAGCGTCATGATGCAGCTGAA
GCTTTCGGATGGATCCGCACACCTCTTCGAGGTCCCCACGGCCAAGTTCCAGGAGATGAG
GTTCGCCGTGGCCCTGCTCATGAAAGAGATGGCCGACATGGAGAAGAGATGCGAGCGCAA
ACTGCAGGAATAACCCTCCCCCGCCAGTCCCCTTCTGGTCACCCCGGGGACAGCTGGCTC
AGACGCTGTCTCCAGAACGAAGCCCGGCCCCCACCCTCAGGAGGCCCTCCAGTGAGAGCG
TTGGGTGAAACCACATCATTCTATAAATGGAGGACATTCTTTTTTTTGGAAGTAAAGCGA
CTATGAAAACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41351318|gb|AAH65729.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41351318|gb|AAH65729.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               266-385, - strand, RNAz p=0.823792

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-385, - strand, RNAz p=0.823792

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-909, gnl|bosTau2|chr14 (3166184-3165308)
               

               
               26-909, gnl|Hg17|chr8 (146047560-146046650)
               

               
               26-909, gnl|Mm7|chr15 (76982316-76983132)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-909, gnl|bosTau2|chr14 (3166184-3165308)
               

               
               26-909, gnl|Hg17|chr8 (146047560-146046650)
               

               
               26-909, gnl|Mm7|chr15 (76982316-76983132)

	26-909, gnl\|bosTau2\|chr14 (3166184-3165308)
	26-909, gnl\|Hg17\|chr8 (146047560-146046650)
	26-909, gnl\|Mm7\|chr15 (76982316-76983132)