Non-Coding RNA Search

Ss1.1-Pig3-SRG8018P03.5

Sequence:


               
               TGGCCGCCCCCTCCGGCCGGGACCAGTTGGAGCTGGACAAGCTGAAAGATAATCTGCAGG
GGTACAAAACCCAAAATAAATTTCTAAATAAGGAAATTTTAGAACTCTCAGCTCTACGGA
GAAATGCAGAAAGAAGAGAGAGGGATTTGATGGCAAAGTATTCTAGCCTGGAAGCCAAGC
TCTGCCAGATAGAAAGCAAATATTTGATACTGCTCCAAGAAATGAAGACCCCAGTTTGCT
CATAAGAACAGGGGCCGGCTCGGGATGTCATAGCGCATTTGCTGGAGGACGCTCTGCAGG
TCGAGAGCCCCGAGCATCCGGAGCAGGCGTTCGTGAAACCTCATCTTGTCAGTGAATATG
ACATTTATGGGTTTAGGACCGTCCCAGAGGATGACGAGGAAGAGAAGTTGGTCGCCAAAG
TCCGGGCATTGGACTTGAAGACTCTCTACCTCACAGAAAACCAGGAGGTCTCCACAGGGG
TCAAGTGGGAAAACTACTTTGCGAGCACAATGAACAGGGAAATGATGTGCTCCCCGGAAC
TAAAAAACTTGATCCGAGCAGGCATTCCCCACGAGCACCGTTCCAAGGTGTGGAAGTGGT
GTGTGGACCTTCACACCAGGAAGTTCAAGGACAGCACTCAGCCTGGTTACTTCCAGAACT
TGCTCCAGAAGGCGCTGGAGAAACAGAACCCGGCCTCCAAGCAGATCGAGCTGGATCTGC
TGCGGACTCTGCCCAACAACAAACATTACTCGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCGCCCCCTCCGGCCGGGACCAGTTGGAGCTGGACAAGCTGAAAGATAATCTGCAGG
GGTACAAAACCCAAAATAAATTTCTAAATAAGGAAATTTTAGAACTCTCAGCTCTACGGA
GAAATGCAGAAAGAAGAGAGAGGGATTTGATGGCAAAGTATTCTAGCCTGGAAGCCAAGC
TCTGCCAGATAGAAAGCAAATATTTGATACTGCTCCAAGAAATGAAGACCCCAGTTTGCT
CATAAGAACAGGGGCCGGCTCGGGATGTCATAGCGCATTTGCTGGAGGACGCTCTGCAGG
TCGAGAGCCCCGAGCATCCGGAGCAGGCGTTCGTGAAACCTCATCTTGTCAGTGAATATG
ACATTTATGGGTTTAGGACCGTCCCAGAGGATGACGAGGAAGAGAAGTTGGTCGCCAAAG
TCCGGGCATTGGACTTGAAGACTCTCTACCTCACAGAAAACCAGGAGGTCTCCACAGGGG
TCAAGTGGGAAAACTACTTTGCGAGCACAATGAACAGGGAAATGATGTGCTCCCCGGAAC
TAAAAAACTTGATCCGAGCAGGCATTCCCCACGAGCACCGTTCCAAGGTGTGGAAGTGGT
GTGTGGACCTTCACACCAGGAAGTTCAAGGACAGCACTCAGCCTGGTTACTTCCAGAACT
TGCTCCAGAAGGCGCTGGAGAAACAGAACCCGGCCTCCAAGCAGATCGAGCTGGATCTGC
TGCGGACTCTGCCCAACAACAAACATTACTCGTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7020087|dbj|BAA90990.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020087|dbj|BAA90990.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               48-669, + strand, RNAz p=0.978446
               

               
               48-669, - strand, RNAz p=0.978446
               

               
               48-147, + strand, RNAz p=0.77164
               

               
               48-147, - strand, RNAz p=0.77164

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-669, + strand, RNAz p=0.978446
               

               
               48-669, - strand, RNAz p=0.978446
               

               
               48-147, + strand, RNAz p=0.77164
               

               
               48-147, - strand, RNAz p=0.77164

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of BC033712, +
               

               
               3' of BC033712, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC033712, +
               

               
               3' of BC033712, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               48-158, gnl|bosTau2|chr21 (1045722-1045612)
               

               
               48-158, gnl|canFam2|chr3 (61106513-61106667)
               

               
               48-158, gnl|danRer3|chr25 (22288140-22288276)
               

               
               48-158, gnl|fr1|chrUn (157738823-157738681)
               

               
               48-158, gnl|galGal2|chr10 (4641748-4641607)
               

               
               48-158, gnl|hg17|chr15 (76097239-76097396)
               

               
               48-158, gnl|Hg17|chr15 (76097354-76097244)
               

               
               48-158, gnl|loxAfr1|scaffold_14511 (22617-22772)
               

               
               48-158, gnl|mm7|chr9 (89852161-89852322)
               

               
               48-158, gnl|Mm7|chr9 (89852276-89852166)
               

               
               48-158, gnl|monDom2|scaffold_41 (16386497-16386676)
               

               
               48-158, gnl|panTro1|chr16 (76750679-76750838)
               

               
               48-158, gnl|rheMac2|chr7 (57051396-57051550)
               

               
               48-158, gnl|rn3|chr8 (95149850-95150006)
               

               
               48-158, gnl|tetNig1|chr13 (7317009-7316876)
               

               
               48-158, gnl|xenTro1|scaffold_62 (1486500-1486657)
               


               
               350-756, gnl|bosTau2|chr21 (1041245-1040839)
               

               
               350-756, gnl|Hg17|chr15 (76092717-76092311)
               

               
               350-756, gnl|Mm7|chr9 (89847884-89847478)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-158, gnl|bosTau2|chr21 (1045722-1045612)
               

               
               48-158, gnl|canFam2|chr3 (61106513-61106667)
               

               
               48-158, gnl|danRer3|chr25 (22288140-22288276)
               

               
               48-158, gnl|fr1|chrUn (157738823-157738681)
               

               
               48-158, gnl|galGal2|chr10 (4641748-4641607)
               

               
               48-158, gnl|hg17|chr15 (76097239-76097396)
               

               
               48-158, gnl|Hg17|chr15 (76097354-76097244)
               

               
               48-158, gnl|loxAfr1|scaffold_14511 (22617-22772)
               

               
               48-158, gnl|mm7|chr9 (89852161-89852322)
               

               
               48-158, gnl|Mm7|chr9 (89852276-89852166)
               

               
               48-158, gnl|monDom2|scaffold_41 (16386497-16386676)
               

               
               48-158, gnl|panTro1|chr16 (76750679-76750838)
               

               
               48-158, gnl|rheMac2|chr7 (57051396-57051550)
               

               
               48-158, gnl|rn3|chr8 (95149850-95150006)
               

               
               48-158, gnl|tetNig1|chr13 (7317009-7316876)
               

               
               48-158, gnl|xenTro1|scaffold_62 (1486500-1486657)
               


               
               350-756, gnl|bosTau2|chr21 (1041245-1040839)
               

               
               350-756, gnl|Hg17|chr15 (76092717-76092311)
               

               
               350-756, gnl|Mm7|chr9 (89847884-89847478)

	48-669, + strand, RNAz p=0.978446
	48-669, - strand, RNAz p=0.978446
	48-147, + strand, RNAz p=0.77164
	48-147, - strand, RNAz p=0.77164

	48-158, gnl\|bosTau2\|chr21 (1045722-1045612)
	48-158, gnl\|canFam2\|chr3 (61106513-61106667)
	48-158, gnl\|danRer3\|chr25 (22288140-22288276)
	48-158, gnl\|fr1\|chrUn (157738823-157738681)
	48-158, gnl\|galGal2\|chr10 (4641748-4641607)
	48-158, gnl\|hg17\|chr15 (76097239-76097396)
	48-158, gnl\|Hg17\|chr15 (76097354-76097244)
	48-158, gnl\|loxAfr1\|scaffold_14511 (22617-22772)
	48-158, gnl\|mm7\|chr9 (89852161-89852322)
	48-158, gnl\|Mm7\|chr9 (89852276-89852166)
	48-158, gnl\|monDom2\|scaffold_41 (16386497-16386676)
	48-158, gnl\|panTro1\|chr16 (76750679-76750838)
	48-158, gnl\|rheMac2\|chr7 (57051396-57051550)
	48-158, gnl\|rn3\|chr8 (95149850-95150006)
	48-158, gnl\|tetNig1\|chr13 (7317009-7316876)
	48-158, gnl\|xenTro1\|scaffold_62 (1486500-1486657)

	350-756, gnl\|bosTau2\|chr21 (1041245-1040839)
	350-756, gnl\|Hg17\|chr15 (76092717-76092311)
	350-756, gnl\|Mm7\|chr9 (89847884-89847478)