Non-Coding RNA Search

Ss1.1-Pig3-SRG8019D03.3

Sequence:


               
               GGAATCCTAAGGAGGTGACTGACCCGCAAGTGGAAGACACCTTGCAGGCCTTGATTCCTT
TGGGAAATGGGTCAAGCATGATTCATACTTCCATTGCTCCAACAGAAAGAGGAGCTGTAG
CTGTGGATATGGGTGTCAGCAACCAGAGCAAGGAGGAAAAGTGTCCTTGGGGGGATCGTG
AGGCAGCTCCCTGGATTGCTGAAAAGCTTAAAAAAAGAGGCAGTGAAAGCAGAAACAAAA
AGTTTAAAAATAATTATTCCACACAGCCTGCTAGAATGGAGAGGAAGGAAGAAATCTTCA
ACCTCCCTTTTGTAGGTAGTACTCCCCATCAAAACAAGGAATTAGAACTCACTTTCCCCA
TAAATCATGACCCTTTGTTCTCATGTGCATCAGATACACCCACAGTGGGAGTAGCTGACC
AAAAGGGTAGAAATGCTGAGGCTAATTCTTTGGAGCTTGGGGCTGTTGGCAGGAACAAAA
CAAACATAGGCGAGGATTCTGCTGTTACCCAACCAACTACCAAGGTGACAGATGTGAGCT
GCCAAGACCAAATCCAGGGGGCAGGATTTCTCCCTTCGGTACTGTGTGAGGAGAATAAGA
TAGATACAGGCAAGGGACACACTGCAGTAGCTGACAAACCAAATAAAAGGAGTAATGATG
GAAAAAGCAAAGAGGTTAAAAATAGTTTCCCTGAGAAGCACATTCTGGAGAATAAGATAG
ATGCAACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCCTAAGGAGGTGACTGACCCGCAAGTGGAAGACACCTTGCAGGCCTTGATTCCTT
TGGGAAATGGGTCAAGCATGATTCATACTTCCATTGCTCCAACAGAAAGAGGAGCTGTAG
CTGTGGATATGGGTGTCAGCAACCAGAGCAAGGAGGAAAAGTGTCCTTGGGGGGATCGTG
AGGCAGCTCCCTGGATTGCTGAAAAGCTTAAAAAAAGAGGCAGTGAAAGCAGAAACAAAA
AGTTTAAAAATAATTATTCCACACAGCCTGCTAGAATGGAGAGGAAGGAAGAAATCTTCA
ACCTCCCTTTTGTAGGTAGTACTCCCCATCAAAACAAGGAATTAGAACTCACTTTCCCCA
TAAATCATGACCCTTTGTTCTCATGTGCATCAGATACACCCACAGTGGGAGTAGCTGACC
AAAAGGGTAGAAATGCTGAGGCTAATTCTTTGGAGCTTGGGGCTGTTGGCAGGAACAAAA
CAAACATAGGCGAGGATTCTGCTGTTACCCAACCAACTACCAAGGTGACAGATGTGAGCT
GCCAAGACCAAATCCAGGGGGCAGGATTTCTCCCTTCGGTACTGTGTGAGGAGAATAAGA
TAGATACAGGCAAGGGACACACTGCAGTAGCTGACAAACCAAATAAAAGGAGTAATGATG
GAAAAAGCAAAGAGGTTAAAAATAGTTTCCCTGAGAAGCACATTCTGGAGAATAAGATAG
ATGCAACAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-139, - strand, RNAz p=0.979052
               

               
               201-342, - strand, RNAz p=0.984311

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-139, - strand, RNAz p=0.979052
               

               
               201-342, - strand, RNAz p=0.984311

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-732, gnl|bosTau2|chr22 (40690808-40690075)
               

               
               1-732, gnl|canFam2|chr20 (44052262-44050226)
               

               
               1-732, gnl|dasNov1|scaffold_16826 (83391-85424)
               

               
               1-732, gnl|echTel1|scaffold_318843 (81475-83448)
               

               
               1-732, gnl|hg17|chr3 (47925278-47927315)
               

               
               1-732, gnl|Hg17|chr3 (47927495-47926747)
               

               
               1-732, gnl|loxAfr1|scaffold_17581 (42088-44119)
               

               
               1-732, gnl|mm7|chr9 (109737589-109735619)
               

               
               1-732, gnl|Mm7|chr9 (109735440-109736159)
               

               
               1-732, gnl|monDom2|scaffold_5 (82915499-82917578)
               

               
               1-732, gnl|oryCun1|scaffold_182706 (13871-11869)
               

               
               1-732, gnl|panTro1|chr2 (49403026-49405063)
               

               
               1-732, gnl|rheMac2|chr2 (88604190-88602153)
               

               
               1-732, gnl|rn3|chr8 (114419588-114417586)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr22 (40690808-40690075)
               

               
               1-732, gnl|canFam2|chr20 (44052262-44050226)
               

               
               1-732, gnl|dasNov1|scaffold_16826 (83391-85424)
               

               
               1-732, gnl|echTel1|scaffold_318843 (81475-83448)
               

               
               1-732, gnl|hg17|chr3 (47925278-47927315)
               

               
               1-732, gnl|Hg17|chr3 (47927495-47926747)
               

               
               1-732, gnl|loxAfr1|scaffold_17581 (42088-44119)
               

               
               1-732, gnl|mm7|chr9 (109737589-109735619)
               

               
               1-732, gnl|Mm7|chr9 (109735440-109736159)
               

               
               1-732, gnl|monDom2|scaffold_5 (82915499-82917578)
               

               
               1-732, gnl|oryCun1|scaffold_182706 (13871-11869)
               

               
               1-732, gnl|panTro1|chr2 (49403026-49405063)
               

               
               1-732, gnl|rheMac2|chr2 (88604190-88602153)
               

               
               1-732, gnl|rn3|chr8 (114419588-114417586)

	1-139, - strand, RNAz p=0.979052
	201-342, - strand, RNAz p=0.984311

	1-732, gnl\|bosTau2\|chr22 (40690808-40690075)
	1-732, gnl\|canFam2\|chr20 (44052262-44050226)
	1-732, gnl\|dasNov1\|scaffold_16826 (83391-85424)
	1-732, gnl\|echTel1\|scaffold_318843 (81475-83448)
	1-732, gnl\|hg17\|chr3 (47925278-47927315)
	1-732, gnl\|Hg17\|chr3 (47927495-47926747)
	1-732, gnl\|loxAfr1\|scaffold_17581 (42088-44119)
	1-732, gnl\|mm7\|chr9 (109737589-109735619)
	1-732, gnl\|Mm7\|chr9 (109735440-109736159)
	1-732, gnl\|monDom2\|scaffold_5 (82915499-82917578)
	1-732, gnl\|oryCun1\|scaffold_182706 (13871-11869)
	1-732, gnl\|panTro1\|chr2 (49403026-49405063)
	1-732, gnl\|rheMac2\|chr2 (88604190-88602153)
	1-732, gnl\|rn3\|chr8 (114419588-114417586)