Ss1.1-Pig3-SRG8019D09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATAGCTCGACGATGTTCCGTTGGTGGAATTCATGAAGATACCAGCTGCCTTATTATGA TCTTGTACCTTCTGATCCATCAGTTGAAGAAATGAGAAAAGTTGTTTGTGAACAGAAGTT AAGGCCAAATATACCTAACAGATGGCACAGCTGTGAAGCCTTAAGAGTAATGGCTAAAAT TATGAGAGAATGTTGGTATGCCAATGGAGCAGCCAGGCTCACAGCTTTGCGGATTAAGAA AACATTGTCACAACTCAGTCAGCAGGAGAGGCATCAAAATGTAAATTCTGCTGCTTTGCC TGAACTCTCCTTTTTCTTCAGATCTGCTCCTGGGTTTTAATTTGGGAGGTCAATTGTTCT ACCTCACTGAGAGGGGACAGAAGGATATTGCTTCCTTTTACAGCAATGTAACAAGGTCAA TTAAAAACTTCCCAGGATTTCTTTGGACCCAGGAAACAGCCATGTGAGGTCCTTTCTGTG CACTATGAACGCTTCTTTCCCAGGACGGTTACAAATTTGTCGTGTAGTCTACCTTTATTT TTTATTAACACAAAACTTGTTTTTTTTTAAATGATTGCTGGTCTTAACTTTAGGTAACTC TGCTGTGTTGAAGATCATCTTTAAGGGTAAAGGAGCTGGATTGCTGAGCTATATAAAACA TTTATTTTTAAAGAAAGTGATTTACTCCTGGTTAGTACATTCTCAGAGGATTCTGAACCA CTAAAGAGTTTCCTTGATTCAGACTTTGAATGTACTGTTCTATAATTTTCAGGATCTTAA AACCAATACTTATGAAACTCTTATCTTGAGTCTAAAAATGACCTCATATATAGTAAAGTA GTGAGGAACATAATTTATGCAATTGTAATTTGTATATTATTATTGTTCTTTCACATATTC AGAACATTACATGCCTTCAAAATGGGATTGTACTATACCAGTAAGTGCCACTTCTGTGTC TAATGGAAATGAGTAAAATTGCTTAAAGTATGTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATAGCTCGACGATGTTCCGTTGGTGGAATTCATGAAGATACCAGCTGCCTTATTATGA TCTTGTACCTTCTGATCCATCAGTTGAAGAAATGAGAAAAGTTGTTTGTGAACAGAAGTT AAGGCCAAATATACCTAACAGATGGCACAGCTGTGAAGCCTTAAGAGTAATGGCTAAAAT TATGAGAGAATGTTGGTATGCCAATGGAGCAGCCAGGCTCACAGCTTTGCGGATTAAGAA AACATTGTCACAACTCAGTCAGCAGGAGAGGCATCAAAATGTAAATTCTGCTGCTTTGCC TGAACTCTCCTTTTTCTTCAGATCTGCTCCTGGGTTTTAATTTGGGAGGTCAATTGTTCT ACCTCACTGAGAGGGGACAGAAGGATATTGCTTCCTTTTACAGCAATGTAACAAGGTCAA TTAAAAACTTCCCAGGATTTCTTTGGACCCAGGAAACAGCCATGTGAGGTCCTTTCTGTG CACTATGAACGCTTCTTTCCCAGGACGGTTACAAATTTGTCGTGTAGTCTACCTTTATTT TTTATTAACACAAAACTTGTTTTTTTTTAAATGATTGCTGGTCTTAACTTTAGGTAACTC TGCTGTGTTGAAGATCATCTTTAAGGGTAAAGGAGCTGGATTGCTGAGCTATATAAAACA TTTATTTTTAAAGAAAGTGATTTACTCCTGGTTAGTACATTCTCAGAGGATTCTGAACCA CTAAAGAGTTTCCTTGATTCAGACTTTGAATGTACTGTTCTATAATTTTCAGGATCTTAA AACCAATACTTATGAAACTCTTATCTTGAGTCTAAAAATGACCTCATATATAGTAAAGTA GTGAGGAACATAATTTATGCAATTGTAATTTGTATATTATTATTGTTCTTTCACATATTC AGAACATTACATGCCTTCAAAATGGGATTGTACTATACCAGTAAGTGCCACTTCTGTGTC TAATGGAAATGAGTAAAATTGCTTAAAGTATGTGAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 677-785, - strand, RNAz p=0.97048 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 677-785, - strand, RNAz p=0.97048 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 27-158, gnl|bosTau2|chr2 (26383502-26383634) | |
| 27-158, gnl|canFam2|chr36 (6550598-6550743) | |
| 27-158, gnl|danRer3|chrNA (124389515-124389660) | |
| 27-158, gnl|dasNov1|scaffold_29601 (46902-46757) | |
| 27-158, gnl|echTel1|scaffold_323769 (47150-47017) | |
| 27-158, gnl|fr1|chrUn (25763346-25763201) | |
| 27-158, gnl|galGal2|chr7 (36862131-36862268) | |
| 27-158, gnl|hg17|chr2 (158220589-158220734) | |
| 27-158, gnl|Hg17|chr2 (158220724-158220592) | |
| 27-158, gnl|loxAfr1|scaffold_13593 (3141-2999) | |
| 27-158, gnl|mm7|chr2 (58280923-58281068) | |
| 27-158, gnl|Mm7|chr2 (58281058-58280926) | |
| 27-158, gnl|monDom2|scaffold_2 (50904996-50905141) | |
| 27-158, gnl|oryCun1|scaffold_200309 (292810-292955) | |
| 27-158, gnl|panTro1|chr13 (47417456-47417601) | |
| 27-158, gnl|rheMac2|chr12 (21133751-21133896) | |
| 27-158, gnl|rn3|chr3 (39928130-39928275) | |
| 27-158, gnl|tetNig1|chr2 (12170264-12170119) | |
| 27-158, gnl|xenTro1|scaffold_279 (488059-487915) | |
| 602-987, gnl|bosTau2|chr29 (24279456-24279844) | |
| 602-987, gnl|Hg17|chr9 (98991450-98991835) | |
| 602-987, gnl|Mm7|chr4 (47424878-47425230) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-158, gnl|bosTau2|chr2 (26383502-26383634) | |
| 27-158, gnl|canFam2|chr36 (6550598-6550743) | |
| 27-158, gnl|danRer3|chrNA (124389515-124389660) | |
| 27-158, gnl|dasNov1|scaffold_29601 (46902-46757) | |
| 27-158, gnl|echTel1|scaffold_323769 (47150-47017) | |
| 27-158, gnl|fr1|chrUn (25763346-25763201) | |
| 27-158, gnl|galGal2|chr7 (36862131-36862268) | |
| 27-158, gnl|hg17|chr2 (158220589-158220734) | |
| 27-158, gnl|Hg17|chr2 (158220724-158220592) | |
| 27-158, gnl|loxAfr1|scaffold_13593 (3141-2999) | |
| 27-158, gnl|mm7|chr2 (58280923-58281068) | |
| 27-158, gnl|Mm7|chr2 (58281058-58280926) | |
| 27-158, gnl|monDom2|scaffold_2 (50904996-50905141) | |
| 27-158, gnl|oryCun1|scaffold_200309 (292810-292955) | |
| 27-158, gnl|panTro1|chr13 (47417456-47417601) | |
| 27-158, gnl|rheMac2|chr12 (21133751-21133896) | |
| 27-158, gnl|rn3|chr3 (39928130-39928275) | |
| 27-158, gnl|tetNig1|chr2 (12170264-12170119) | |
| 27-158, gnl|xenTro1|scaffold_279 (488059-487915) | |
| 602-987, gnl|bosTau2|chr29 (24279456-24279844) | |
| 602-987, gnl|Hg17|chr9 (98991450-98991835) | |
| 602-987, gnl|Mm7|chr4 (47424878-47425230) |